DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shmt and shmt2

DIOPT Version :9

Sequence 1:NP_572278.1 Gene:Shmt / 31524 FlyBaseID:FBgn0029823 Length:537 Species:Drosophila melanogaster
Sequence 2:NP_001007880.1 Gene:shmt2 / 493265 XenbaseID:XB-GENE-957476 Length:496 Species:Xenopus tropicalis


Alignment Length:459 Identity:282/459 - (61%)
Similarity:360/459 - (78%) Gaps:3/459 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    78 QTPLAQGDPELAELIKKEKERQREGLEMIASENFTSVAVLESLSSCLTNKYSEGYPGKRYYGGNE 142
            |..||:||||:.:|::|||:||..||||||.|||.|.|.||:|.|||.|||||||||||||||.|
 Frog    38 QESLAEGDPEMWDLVQKEKDRQCRGLEMIALENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAE 102

  Fly   143 YIDRIELLAQQRGRELFNLDDEKWGVNVQPYSGSPANLAVYTGVCRPHDRIMGLDLPDGGHLTHG 207
            .:|:||||.|||..:.|:|:.||||||||||||||||.|.||.|.:|||||||||||||||||||
 Frog   103 VVDKIELLCQQRALDAFDLNPEKWGVNVQPYSGSPANFAAYTAVLQPHDRIMGLDLPDGGHLTHG 167

  Fly   208 FFTPTKKISATSIFFESMPYKVNPETGIIDYDKLAEAAKNFRPQIIIAGISCYSRLLDYARFRQI 272
            :.:..|:||||||:|||||||:||.||:||||:|...|:.|||::||||.|.|:||:||||.|::
 Frog   168 YMSDVKRISATSIYFESMPYKLNPATGLIDYDQLEMTARLFRPKLIIAGTSAYARLIDYARMRKV 232

  Fly   273 CDDVGAYLMADMAHVAGIVAAGLIPSPFEWADIVTTTTHKTLRGPRAGVIFFRKGVRST-KANGD 336
            ||::.|||:|||||::|:||||:||||||.|||||:||||||||.|:|:||:||||:|. |..|.
 Frog   233 CDEMKAYLLADMAHISGLVAAGVIPSPFEHADIVTSTTHKTLRGARSGLIFYRKGVKSVDKKTGK 297

  Fly   337 KVLYDLEERINQAVFPSLQGGPHNNAVAGIATAFKQAKSPEFKAYQTQVLKNAKALCDGLISRGY 401
            .|||:||:::|.:||||:||||||:|:|.:|.|.|||.||.|:.|..|||||||::...|:|:||
 Frog   298 DVLYNLEDKVNFSVFPSIQGGPHNHAIAAVAVALKQASSPMFREYAVQVLKNAKSMAAALLSKGY 362

  Fly   402 QVATGGTDVHLVLVDVRKAGLTGAKAEYILEEVGIACNKNTVPGDKSAMNPSGIRLGTPALTTRG 466
            .:.:||||.||||||:|..|:.||:||.:||.|.|..||||.||||||:.|.|:|||.||||:|.
 Frog   363 TLVSGGTDNHLVLVDLRPKGIDGARAERVLELVSITANKNTCPGDKSALTPGGLRLGAPALTSRN 427

  Fly   467 LAEQDIEQVVAFIDAALKVGVQAAKLAGSPKITDYHKTLAENVELKAQVDEIRKNVAQFSRKFPL 531
            ..|.|.|:||.|||..:::|:...:...  |:.|:...|.|:.|...::.::||.|.||:|.||:
 Frog   428 FKEADFEKVVHFIDEGIRIGLDVKRKTN--KLQDFKNFLLEDHETVNRIADLRKQVEQFARSFPM 490

  Fly   532 PGLE 535
            ||.:
 Frog   491 PGFD 494

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShmtNP_572278.1 PLN03226 79..536 CDD:215639 281/458 (61%)
SHMT 82..493 CDD:99733 265/411 (64%)
shmt2NP_001007880.1 PLN03226 26..494 CDD:215639 282/457 (62%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 552 1.000 Domainoid score I244
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 591 1.000 Inparanoid score I972
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D234916at33208
OrthoFinder 1 1.000 - - FOG0000859
OrthoInspector 1 1.000 - - otm49023
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X557
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.060

Return to query results.
Submit another query.