DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shmt and Shmt2

DIOPT Version :9

Sequence 1:NP_572278.1 Gene:Shmt / 31524 FlyBaseID:FBgn0029823 Length:537 Species:Drosophila melanogaster
Sequence 2:NP_001008323.1 Gene:Shmt2 / 299857 RGDID:1308582 Length:504 Species:Rattus norvegicus


Alignment Length:500 Identity:284/500 - (56%)
Similarity:368/500 - (73%) Gaps:15/500 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 GALTRIAAKKQPSPTPFLPAIRRYSDSKQSTLKNMADQKLLQTPLAQGDPELAELIKKEKERQRE 101
            |.|..:||:.|            :|:..|......|.....|..|:..|||:.||:::||:||..
  Rat    17 GQLVCMAARAQ------------HSEVAQKQAGEAAGGWTGQESLSDSDPEIWELLQREKDRQCR 69

  Fly   102 GLEMIASENFTSVAVLESLSSCLTNKYSEGYPGKRYYGGNEYIDRIELLAQQRGRELFNLDDEKW 166
            |||:||||||.|.|.||:|.|||.|||||||||||||||.|.:|.||||.|:|..|.|:||..:|
  Rat    70 GLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQW 134

  Fly   167 GVNVQPYSGSPANLAVYTGVCRPHDRIMGLDLPDGGHLTHGFFTPTKKISATSIFFESMPYKVNP 231
            |||||||||||||||.||.:.:|||||||||||||||||||:.:..|:||||||||||||||:||
  Rat   135 GVNVQPYSGSPANLAAYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNP 199

  Fly   232 ETGIIDYDKLAEAAKNFRPQIIIAGISCYSRLLDYARFRQICDDVGAYLMADMAHVAGIVAAGLI 296
            :||:||||:||..|:.|||::||||.|.|:||:||||.|::||:|.|:|:|||||::|:|||.:|
  Rat   200 QTGLIDYDQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVI 264

  Fly   297 PSPFEWADIVTTTTHKTLRGPRAGVIFFRKGVRST-KANGDKVLYDLEERINQAVFPSLQGGPHN 360
            ||||::||||||||||||||.|:|:||:|||||:. ...|.::.|..|:|||.||||||||||||
  Rat   265 PSPFKYADIVTTTTHKTLRGARSGLIFYRKGVRTVDPKTGQEIPYTFEDRINFAVFPSLQGGPHN 329

  Fly   361 NAVAGIATAFKQAKSPEFKAYQTQVLKNAKALCDGLISRGYQVATGGTDVHLVLVDVRKAGLTGA 425
            :|:|.:|.|.|||.:|.|:.|..|||:||:|:.|.|:.|||.:.:||||.||||||:|..||.||
  Rat   330 HAIAAVAVALKQACTPMFREYSLQVLRNAQAMADALLKRGYSLVSGGTDTHLVLVDLRPKGLDGA 394

  Fly   426 KAEYILEEVGIACNKNTVPGDKSAMNPSGIRLGTPALTTRGLAEQDIEQVVAFIDAALKVGVQAA 490
            :||.:||.|.|..||||.|||:||:.|.|:|||.||||:|...|.|..:||.|||..:.:|::..
  Rat   395 RAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVK 459

  Fly   491 KLAGSPKITDYHKTLAENVELKAQVDEIRKNVAQFSRKFPLPGLE 535
            :  .:.|:.|:...|.::.|...::..:|:.|.||:|.||:||.:
  Rat   460 R--KTAKLQDFKSFLLKDPETSQRLANLRQQVEQFARGFPMPGFD 502

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShmtNP_572278.1 PLN03226 79..536 CDD:215639 275/457 (60%)
SHMT 82..493 CDD:99733 261/411 (64%)
Shmt2NP_001008323.1 PLN03226 45..502 CDD:215639 276/458 (60%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 542 1.000 Domainoid score I254
eggNOG 1 0.900 - - E1_COG0112
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 575 1.000 Inparanoid score I1007
OMA 1 1.010 - - QHG60631
OrthoDB 1 1.010 - - D234916at33208
OrthoFinder 1 1.000 - - FOG0000859
OrthoInspector 1 1.000 - - otm45938
orthoMCL 1 0.900 - - OOG6_100262
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X557
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
109.780

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