DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shmt and shm1

DIOPT Version :10

Sequence 1:NP_572278.1 Gene:Shmt / 31524 FlyBaseID:FBgn0029823 Length:537 Species:Drosophila melanogaster
Sequence 2:NP_594037.1 Gene:shm1 / 2542651 PomBaseID:SPAC24C9.12C Length:467 Species:Schizosaccharomyces pombe


Alignment Length:462 Identity:254/462 - (54%)
Similarity:338/462 - (73%) Gaps:3/462 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 ADQKLLQTPLAQGDPELAELIKKEKERQREGLEMIASENFTSVAVLESLSSCLTNKYSEGYPGKR 136
            ::..::.|||.:.||.:||:::.|.:|||..:.:||||||||.||:::|.|.::|||||||||.|
pombe     3 SNDSIMLTPLKEQDPTVAEIMRHEADRQRSSVVLIASENFTSRAVMDALGSVMSNKYSEGYPGAR 67

  Fly   137 YYGGNEYIDRIELLAQQRGRELFNLDDEKWGVNVQPYSGSPANLAVYTGVCRPHDRIMGLDLPDG 201
            |||||::||:||.|.|:|....||||..|||||||..||||||:.||..:..||.|:||||||.|
pombe    68 YYGGNKFIDQIETLCQERALAAFNLDPAKWGVNVQCLSGSPANMQVYQAIMPPHGRLMGLDLPSG 132

  Fly   202 GHLTHGFFTPTKKISATSIFFESMPYKVNPETGIIDYDKLAEAAKNFRPQIIIAGISCYSRLLDY 266
            |||:||:.|.||||||.|.:||||||:|:|.||:||||.|...|:.|||:|::||.|.|.||:||
pombe   133 GHLSHGYQTDTKKISAVSTYFESMPYRVDPNTGLIDYDMLEHDAQLFRPKILVAGTSAYCRLIDY 197

  Fly   267 ARFRQICDDVGAYLMADMAHVAGIVAAGLIPSPFEWADIVTTTTHKTLRGPRAGVIFFRKGVRST 331
            ||.|||.|.|.|||:.||||::|:|:||:||||||:||:|||||||:|||||..:||||:|:|..
pombe   198 ARMRQIADSVNAYLVVDMAHISGLVSAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRRGLRKH 262

  Fly   332 KANGDKVLYDLEERINQAVFPSLQGGPHNNAVAGIATAFKQAKSPEFKAYQTQVLKNAKALCDGL 396
            ...|:.:.||||::||.:|||..||||||:.:..:|.|.||.:.|.:|.||.||:||||...:..
pombe   263 DKKGNPIYYDLEDKINFSVFPGHQGGPHNHTITALAVALKQCQEPAYKEYQAQVVKNAKVCEEEF 327

  Fly   397 ISRGYQVATGGTDVHLVLVDVRKAGLTGAKAEYILEEVGIACNKNTVPGDKSAMNPSGIRLGTPA 461
            ..|||::|..|||.|:|||||:..|:.||:||.:||.:.|..||||||.||||.:|||||:||||
pombe   328 KKRGYKLAADGTDSHMVLVDVKSKGVDGARAERVLELINIVTNKNTVPSDKSAFSPSGIRVGTPA 392

  Fly   462 LTTRGLAEQDIEQVVAFIDAAL--KVGVQAAKLAGSPKITDYHKTLAENVELKAQVDEIRKNVAQ 524
            :||||..|||..:||.:||.||  ...:|......:.|:.|:...|.|. |...::.:::|.||:
pombe   393 MTTRGFKEQDFVRVVDYIDRALTFAANLQKELPKDANKLKDFKAKLGEG-EQYPELVQLQKEVAE 456

  Fly   525 FSRKFPL 531
            ::..|||
pombe   457 WASSFPL 463

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShmtNP_572278.1 PLN03226 79..536 CDD:215639 254/455 (56%)
shm1NP_594037.1 PLN03226 9..462 CDD:215639 251/453 (55%)

Return to query results.
Submit another query.