DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12236 and lov

DIOPT Version :10

Sequence 1:NP_727050.1 Gene:CG12236 / 31523 FlyBaseID:FBgn0029822 Length:553 Species:Drosophila melanogaster
Sequence 2:NP_611994.3 Gene:lov / 38007 FlyBaseID:FBgn0266129 Length:1143 Species:Drosophila melanogaster


Alignment Length:613 Identity:127/613 - (20%)
Similarity:227/613 - (37%) Gaps:143/613 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 ATTQQYSLRWNNYLRHLTYSLDNHRLNDDFVDVSLCVDGRRIKAHKVVLSSCSSYFKEIFKENPH 66
            |....|||||||:..|:..:.|........|||:|......|:|||:|||:||.:|:.:|.|.|.
  Fly   110 APQDHYSLRWNNHQNHILRAFDALLKTKTLVDVTLVCAETSIRAHKMVLSACSPFFQRVFAETPC 174

  Fly    67 PHPVIIFKFIKFEDLNSIIEFMYQGEVNVQQEALQSFLQTAELLAVQGLTAEEKEKPQIPVAPLI 131
            .||||:.|..:...:.:|::|||:||::|.|:.||:.:|..|.|.|:||.  |...|:....|..
  Fly   175 KHPVIVLKDFRGWVVQAIVDFMYRGEISVPQQRLQTLIQAGESLQVRGLV--ESSVPEHTPTPAA 237

  Fly   132 SEHKLIKTIPSTIRAVNEQQQQVSNVAQAQTATQTIEIPAATLLQATNASQ--VPS-QVVAAAAA 193
            |....                   .:......:.|.|....|:::.:...:  :|| ::...|::
  Fly   238 SPDDF-------------------GMLDTSMLSSTFEDECPTMVRPSKGGKLLMPSARLFGNASS 283

  Fly   194 AAAAQQLQVQHQQQQHHHVQTTQIQHIQVQSAPPPQQQQQ------------------------- 233
            |.||..|:.:.:|:....:::.|...   .|:|.|:::|.                         
  Fly   284 AIAALGLRRKREQESDRDLESDQELG---GSSPMPRRKQARPRRRSGDVPHDFTLNKTDAESLQT 345

  Fly   234 -------QQQQQQQQQQQQQQQQQQQSQQQQTTPVQT-------QHLTITNAVALPAASSVKKRK 284
                   ::.::.|::...|...|.::::..::|.:|       |..........|.:.:....:
  Fly   346 VIKHELLERAERDQEEAPDQDNSQGEAEKISSSPAKTLVERAKEQKSMKEEGSDQPRSLNENHHQ 410

  Fly   285 ITFSDDDDNMYTTETVDYAVKDEQTI---VKTAEMTFLRGAVKMDIPDYIVGEVDDRLSDGATPQ 346
            :...|:||     :..|:..::||.|   :.|......:.|........:.......||||    
  Fly   411 LELDDEDD-----DDQDHEEEEEQDIEELIHTTNELRRQAAAAAANAAAMSPNPSPCLSDG---- 466

  Fly   347 TSQD--ATTAAAQNVAQYSSEYEILTESEMEEKYQADADNAEIAIEMTRLLG-----TASGTPGA 404
             .:|  .|....:.::..||..:..:.:....|.|.:.....::::..|.|.     ||..||.:
  Fly   467 -PEDLCTTKKGKELISGPSSSADCESNNNNSSKLQDNNQRIMLSLKDIRQLNANPNPTAIHTPTS 530

  Fly   405 GSGQVMEDSGGGSATTGP-----------STTVSVTQVKSDSKASGTNAALKPGS---------V 449
            .||      |.....|.|           |....:..:::...|:...|....||         .
  Fly   531 CSG------GNNGLLTFPPPGLRPPGLPDSPPCHMEALEAQMHAAAAAAVAAAGSGEHPFHHMEH 589

  Fly   450 TVARSSKSGATASA--------PPAGSDEESVQYTGLAPLNCSFCG------------------- 487
            .:..|..:.|.|:|        |..|.|..:.....|.|:.....|                   
  Fly   590 QMEMSLAAAAAAAAMHQREPRDPRDGRDHNAFASNLLGPMGMPPFGGHNGGHPGNSGPGNGCPGQ 654

  Fly   488 ----RPLKSVNALRRHIASRHSEIQGKE 511
                |..:|:|.|.:.:.....:..|||
  Fly   655 AAHERLEESMNRLSKELGKEFGKEFGKE 682

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12236NP_727050.1 BTB_POZ_BAB-like 31..114 CDD:349624 36/82 (44%)
C2H2 Zn finger 483..512 CDD:275371 8/52 (15%)
C2H2 Zn finger 514..535 CDD:275371
lovNP_611994.3 BTB_POZ_BAB-like 139..222 CDD:349624 36/82 (44%)
HTH_psq 791..834 CDD:283007
Blue background indicates that the domain is not in the aligned region.

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