DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12236 and mamo

DIOPT Version :10

Sequence 1:NP_727050.1 Gene:CG12236 / 31523 FlyBaseID:FBgn0029822 Length:553 Species:Drosophila melanogaster
Sequence 2:NP_572932.2 Gene:mamo / 32353 FlyBaseID:FBgn0267033 Length:1553 Species:Drosophila melanogaster


Alignment Length:705 Identity:163/705 - (23%)
Similarity:253/705 - (35%) Gaps:237/705 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 TQQYSLRWNNYLRHLTYSLDNHRLNDDFVDVSL-CVDGRRIKAHKVVLSSCSSYFKEIFKENPHP 67
            ::.|.||||||..:|.........:...|||:| |.:|..|:|||||||:|||||:.:|.|:|..
  Fly     3 SEHYCLRWNNYQSNLLGVFSQLLQDGSLVDVTLVCSEGTSIRAHKVVLSACSSYFQSLFLEHPEG 67

  Fly    68 HPVIIFKFIKFEDLNSIIEFMYQGEVNVQQEALQSFLQTAELLAVQGL--------TAEEKE--- 121
            |.::|.|.::|.:|.:::||||:||||||...|.:.|:|||.|.|:||        |..|.|   
  Fly    68 HLIVILKDVRFAELQTLVEFMYKGEVNVQYCQLSALLKTAESLKVKGLAEMTNQNTTLREPEREP 132

  Fly   122 ---KPQIPVAPLISEHKLIKTIPSTIRAVNEQQQQVSN---VAQAQTATQTIEIPAATLLQATNA 180
               :||.......|.||...:..:.:.|....|...:.   .|.|.|:|.|....||....||.|
  Fly   133 DRLRPQGGGGSGGSAHKAADSPAAALDATAATQAATATATATAAAATSTSTSATSAAATAAATAA 197

  Fly   181 --------------------------------------SQVPSQVVAAAAAAAAAQQLQVQHQQQ 207
                                                  |...|...|||||||||....|.|.::
  Fly   198 TSASTTATAAAGSSNTTTTTAATTTATCATAATSTAATSSSSSVTSAAAAAAAAASASGVAHSEE 262

  Fly   208 QHHHVQTT--QIQHIQVQSAPPPQQQQQ-----------QQQQQQQQQQQQ-------------- 245
            ......:|  |.:....:|:|.|.::..           :.::|:|.|..:              
  Fly   263 ATSSSSSTGGQKREASDRSSPTPAKRSSRMHPADKVDVAEDREQEQNQADELLSEELLGRNLKDE 327

  Fly   246 ------------------QQQQQQQSQQQQTTPV-----QTQHLTITNAVALPAASSVKKRKITF 287
                              :.:......:::.||:     |..::...:|.|..||.......::.
  Fly   328 EDDDVDELDENEETKLRGRDEDDDDEDEEEDTPMPLDLYQRPNVEPKSAAAATAAQQGGSNSLSG 392

  Fly   288 S--------------DDDDNMYTTETVDYAVKDEQTIVKTAEMTFLRG-------AVKMDIPDYI 331
            |              ::::|..::...:......:|...:...|...|       ||..|..|..
  Fly   393 SSNACHTNSSSNSNNNNNNNNNSSSNNNNNTSSGKTSASSNGGTASSGGTADSVVAVDDDDDDDD 457

  Fly   332 VGE------VDDRLSDGATPQTSQD------ATTAAAQNVAQ----------------------- 361
            .|.      :||||......:...|      ..||.|:.:||                       
  Fly   458 GGHHHQRQVMDDRLEQDVDEEDLDDDVVVVGPATAMARGIAQRLAHQNLQRLHHTHHHAQHQHSQ 522

  Fly   362 ----YSSEY------------------------EIL-----TESEMEEKYQADADNAEIAIEMTR 393
                :|..:                        |||     .|.::|:..:||..:.::.:.|  
  Fly   523 HHHPHSQHHHTPHHQQHHTHSDDEDAMPVIAKSEILDDDYDDEMDLEDDDEADNSSNDLGLNM-- 585

  Fly   394 LLGTASGTPGAGSGQVMEDSGGGSATTG----PSTTVSVTQVKSDSKASGTNAALKPGSVTVARS 454
                ..|:.|||.|      ||...:||    ||..::   :.|.|.|:...||   .::...||
  Fly   586 ----KMGSGGAGGG------GGVDLSTGSTLIPSPLIT---LPSSSAAAAAAAA---AAMESQRS 634

  Fly   455 SKSGATASAPPAGSDEESVQYTGLAPLNCSFCGRPLKSVNALRRHIASRHSEIQG 509
            :.:.:.|.|..||:.:.|:...|         |||           |||.|...|
  Fly   635 TPAMSAAQAAGAGASDLSIGGCG---------GRP-----------ASRSSRDGG 669

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12236NP_727050.1 BTB_POZ_BAB-like 31..114 CDD:349624 44/83 (53%)
C2H2 Zn finger 483..512 CDD:275371 8/27 (30%)
C2H2 Zn finger 514..535 CDD:275371
mamoNP_572932.2 BTB_POZ_BAB-like 30..114 CDD:349624 44/83 (53%)
C2H2 Zn finger 1082..1105 CDD:275368
C2H2 Zn finger 1116..1137 CDD:275368
C2H2 Zn finger 1149..1169 CDD:275368
zf-C2H2 1469..1491 CDD:395048
C2H2 Zn finger 1471..1491 CDD:275368
zf-H2C2_2 1483..1506 CDD:463886
C2H2 Zn finger 1499..1519 CDD:275368
zf-H2C2_2 1511..1536 CDD:463886
C2H2 Zn finger 1527..1547 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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