DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4020 and CG4770

DIOPT Version :9

Sequence 1:NP_001259264.1 Gene:CG4020 / 31522 FlyBaseID:FBgn0029821 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_650848.1 Gene:CG4770 / 42375 FlyBaseID:FBgn0038751 Length:490 Species:Drosophila melanogaster


Alignment Length:494 Identity:156/494 - (31%)
Similarity:267/494 - (54%) Gaps:28/494 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 EAFEDQEIFVTGASGFVGKALIEKLLRSCPKLGRIYVLMRPKKGHTIEERLQLQWESRLYERLRR 69
            :.::|..:|:|||:|||||:|:||||.|.|::.|||:|:|||.|.|:|||.:...::.::||::.
  Fly    14 DIYQDAVVFITGATGFVGKSLLEKLLWSFPQIKRIYMLIRPKGGVTVEERFRGFLQNPIFERIKS 78

  Fly    70 EQPNARSKLVAIAGDVEQLGLGIGSADLERL-RNVNIVYHSAASVRFDDALSTAILLNTRGTHEL 133
            |.|....|:...:|::|...||:..:|...| ..|||::||||:|||::.|..:..:|::.|:.|
  Fly    79 EHPTQLKKIFHFSGNIEDDNLGLNESDRSVLCAEVNIIFHSAATVRFNECLKVSARVNSQATYNL 143

  Fly   134 VKLALEWPKLKAFVHVSTTYSNPGVLEVEERVYP--PLADWR----TTIKLAETYDAEILDIFNL 192
            ::|..:.|.|::|::|||.|.|||...|:|:|||  |..|||    .|.|:.:.|...:.|....
  Fly   144 LELCRQMPYLRSFLYVSTAYCNPGRKYVDEQVYPTMPPVDWRQFLSATQKIPDDYLNRLADYIKG 208

  Fly   193 KYGNFQPNTYTFTKSLAEQVVNEYRDRLPIFIFRPSIVVSTIEEPVPGWADNFNGPTGLLVACGV 257
            .:    .||||||||:|||:||.|:|.:||.|.|||||.:...||.|||.||....:|:::..|.
  Fly   209 PH----VNTYTFTKSIAEQIVNAYKDVIPIVIVRPSIVTAAYREPYPGWIDNIQAISGIMMEIGK 269

  Fly   258 GILRSQNCDPNIVADFVPADIVARTLITSVYKFMGESKSRAKDSDLYVVNCATANISPITMGEVI 322
            |.:.|...:.:::.|.:|.|.|...:|..|        .:||...|.:.|..:...:|||...:.
  Fly   270 GGISSILGNKDLICDIIPVDFVVNAMIMMV--------GKAKLGSLSICNATSGVTNPITWQHLG 326

  Fly   323 DIGKTFIRKNPFEKTLWLPGGGMTTCPVLHFVRFCTMHLLMAIVVD--TLLRLYNEKPFLMKLQR 385
            ::...:.|..|..:.:..|..........|.:....:|.:.|:::|  ||| |..:|..:..:.:
  Fly   327 ELTMKWSRIYPTRRMIMFPNFKYRCSAFNHELAVWVLHFVPALLMDLQTLL-LAQKKRLVTPIAK 390

  Fly   386 RIFAAFSALQVFAMTEWHFQNDNFRALHDVVPANEVSNFGFMQHANINYTEFFQHGIRGAKEFLL 450
            :...|..|...|::.||.|:|.:.....:::........ :.....::|.|:.:..:.|..::|.
  Fly   391 KFRQACLAGSFFSLNEWIFKNKSRFYFKEMIENGTYPTL-YWNLEEMDYDEYVRRHMIGINKYLH 454

  Fly   451 KE--SPESSSAARFRVKIFYVLDFLCRGIVYSFLLRLIF 487
            :|  :.:|:.....|:..|::...|   :.|..|:.:.|
  Fly   455 REKFTVDSNKFMVTRIYWFWIFLHL---MFYMMLVYISF 490

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4020NP_001259264.1 FAR-N_SDR_e 12..333 CDD:187547 125/327 (38%)
FAR_C 359..450 CDD:176924 18/92 (20%)
CG4770NP_650848.1 WcaG 21..358 CDD:223528 128/348 (37%)
FAR-N_SDR_e 21..337 CDD:187547 125/327 (38%)
Sterile 364..455 CDD:281068 19/92 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45466789
Domainoid 1 1.000 159 1.000 Domainoid score I1277
eggNOG 1 0.900 - - E1_COG3320
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 182 1.000 Inparanoid score I1437
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D221518at33208
OrthoFinder 1 1.000 - - FOG0000172
OrthoInspector 1 1.000 - - mtm964
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11011
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X145
109.900

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