DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4020 and CG17560

DIOPT Version :9

Sequence 1:NP_001259264.1 Gene:CG4020 / 31522 FlyBaseID:FBgn0029821 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_650567.1 Gene:CG17560 / 42022 FlyBaseID:FBgn0038450 Length:499 Species:Drosophila melanogaster


Alignment Length:501 Identity:167/501 - (33%)
Similarity:259/501 - (51%) Gaps:32/501 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 FEDQEIFVTGASGFVGKALIEKLLRSCPKLGRIYVLMRPKKGHTIEERLQLQWESRLYERLRREQ 71
            |:::.:|:||.:||:||.:||||||: .::.|||.|:|||:|..||:|:....:..::|.|.|.:
  Fly     9 FKNKTVFLTGGTGFLGKVIIEKLLRT-TEVNRIYSLIRPKRGVPIEDRITTWAKDPVFEVLLRTK 72

  Fly    72 PNARSKLVAIAGDVEQLGLGIGSADLERL-RNVNIVYHSAASVRFDDALSTAILLNTRGTHELVK 135
            |:|..::..||||.....|||..:|...| ..|.||.|.||:||||:||..::.:|.|.|..:::
  Fly    73 PDALQRVCPIAGDCLDPDLGISQSDQRILTAEVQIVIHGAATVRFDEALHISLAINVRATRLMLQ 137

  Fly   136 LALEWPKLKAFVHVSTTYSNPGVLEVEERVYPPLADWRT--TIKLAETYDAEILDIFNLK-YGNF 197
            ||.:..:|.:||||||.|||..|.::.||.||...:..:  .:.:.|....::||..... .|:|
  Fly   138 LAKQMTQLVSFVHVSTAYSNCVVHDIAERFYPEHLNCSSDKILAVGELVSNKLLDAMEPSLVGSF 202

  Fly   198 QPNTYTFTKSLAEQVVNEYRDRLPIFIFRPSIVVSTIEEPVPGWADNFNGPTGLLVACGVGILRS 262
             |||||:||:|||.|:......||:.||||:|::||.:||:.||.||..||..|......||:|.
  Fly   203 -PNTYTYTKALAEDVILREAGNLPLSIFRPAIIMSTYKEPLVGWVDNLFGPLALCFGGARGIMRV 266

  Fly   263 QNCDPNIVADFVPADIVARTLITSVYKFMGESKSRAKDSDLYVVNCATANISPITMGEVIDIGKT 327
            ...||:.....||||......:...::....|....|.:...:...|.:..:.::.|..|.....
  Fly   267 TTVDPSAKISLVPADYCVNVALACAWRTAEISVQNGKVTTPPIYAFAPSENNLMSYGNFIKSSII 331

  Fly   328 FIRKNPFEKTLWLPGGGMTTC-------PVLHFVRFCTMHLLMAIVVDTLLRLYNEKPFLMKLQR 385
            :....|..|.||.|   ...|       |:..|.    :|.|.....|.||||...||.|:.|.|
  Fly   332 YRDIIPLTKMLWYP---FVLCISTTSLFPLAAFF----LHTLPGYFFDLLLRLKGRKPILVDLYR 389

  Fly   386 RIFAAFSALQVFAMTEWHFQNDNFRALHDVVPANEVSNFGFMQHANINYTEFFQHGIRGAKEFLL 450
            :|....:.|..|:.|.|:|...|...|.:.:...:.:.:.| ..|.:::.::|:..:.|.:.::.
  Fly   390 KIHKNIAVLGPFSSTTWNFDMTNTMELREAMSKQDRNLYDF-DMAQLDWNDYFKAAMYGMRLYIG 453

  Fly   451 KESPESSSAA-----RFRVKIFYV-----LDFLCRGIVYSFLLRLI 486
            ||.|.:.|.|     |.|:|:.:.     |..|...|:|| |.||:
  Fly   454 KEKPTAESIAKGLKLRMRLKVLHYAFASSLVALAGYILYS-LARLV 498

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4020NP_001259264.1 FAR-N_SDR_e 12..333 CDD:187547 118/324 (36%)
FAR_C 359..450 CDD:176924 24/90 (27%)
CG17560NP_650567.1 PLN02996 1..441 CDD:215538 149/441 (34%)
FAR-N_SDR_e 12..327 CDD:187547 117/316 (37%)
Sterile 364..454 CDD:281068 24/90 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45466788
Domainoid 1 1.000 159 1.000 Domainoid score I1277
eggNOG 1 0.900 - - E1_COG3320
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 182 1.000 Inparanoid score I1437
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D221518at33208
OrthoFinder 1 1.000 - - FOG0000172
OrthoInspector 1 1.000 - - mtm964
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11011
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X145
109.900

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