DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4020 and far1

DIOPT Version :10

Sequence 1:NP_572276.1 Gene:CG4020 / 31522 FlyBaseID:FBgn0029821 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_001429320.1 Gene:far1 / 406829 ZFINID:ZDB-GENE-040426-2908 Length:518 Species:Danio rerio


Alignment Length:513 Identity:187/513 - (36%)
Similarity:278/513 - (54%) Gaps:30/513 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTIPEAFEDQEIFVTGASGFVGKALIEKLLRSCPKLGRIYVLMRPKKGHTIEERLQLQWESRLYE 65
            :||||.:..:.:.:|||:||:||.|:||||||||.:...|||:|||.|...:.|:......:|::
Zfish     2 VTIPEYYVGKNVLITGATGFMGKVLLEKLLRSCPGVKAAYVLVRPKAGQAPDARIADMINCKLFD 66

  Fly    66 RLRREQPNARSKLVAIAGDVEQLGLGIGSADLERLRN-VNIVYHSAASVRFDDALSTAILLNTRG 129
            |||.:||:...|:|||..|:.|..|.:.:.|.|.|.. :|:|:|.||::||::.|..|:.||...
Zfish    67 RLREDQPDFAGKIVAINSDLTQPNLDLSAEDQETLTGCINVVFHCAATIRFNEPLKDAMQLNVLA 131

  Fly   130 THELVKLALEWPKLKAFVHVSTTYSNPGVLEVEERVYPPLADWRTTIKLAETYDAEILDIFNLKY 194
            |.::|.||.....|:.|:||||.|:|.....:||.||||..|:|..|...|..|.:::.:...:.
Zfish   132 TQKMVSLAHRMKHLEVFIHVSTAYANCDRELIEEVVYPPPVDYRKLIDTLEWMDDKLVSLMTPRL 196

  Fly   195 GNFQPNTYTFTKSLAEQVVNEYRDRLPIFIFRPSIVVSTIEEPVPGWADNFNGPTGLLVACGVGI 259
            ...:|||||:||:||||:|.:....|.|.|.|||||.::.:||.|||.||||||:|:.:|.|.||
Zfish   197 LGERPNTYTYTKALAEQLVQQECGNLNIAIIRPSIVGASWKEPFPGWIDNFNGPSGIFIAAGKGI 261

  Fly   260 LRSQNCDPNIVADFVPADIVARTLITSVYKFMGESKSRAKDSDLYVVNCATANISPITMGEV-ID 323
            ||:.....|.|||.||.|:|..|.:.:.: :.| |:..|:...|.|.||.|..|:|...||| ..
Zfish   262 LRTMRASNNAVADLVPVDVVINTTLAAAW-YSG-SQRHARPRSLLVYNCTTGGINPFHWGEVEYC 324

  Fly   324 IGKTFIRKNPFEKTLWLPGGGMTTCPVLHFVRFCTMHLLMAIVVDTLLRLYNEKPFLMKLQRRIF 388
            |..|| :.||.|:....|...:.:.|..:.......|.|.|::.|..|.|..:||.:||...|:.
Zfish   325 INMTF-KTNPLEQAFRRPNVNLRSNPFTNQYWTTVSHTLPALLYDGFLMLTGQKPRMMKTITRLH 388

  Fly   389 AAFSALQVFAMTEWHFQNDNFRALHDVVPANE--VSNFGFMQHANINYTEFFQHGIRGAKEFLLK 451
            .|...|:.|....|.:..||...|.:.:.|.:  |.||...|   :::.|:.::...|.|:::|.
Zfish   389 KAMMVLEYFTSHSWVWNTDNVTMLMNQMGAEDKKVFNFDVRQ---LHWAEYMENYCMGTKKYVLN 450

  Fly   452 ESPESSSAARFRV-------------------KIFYVLDFLCRGIVYSFLLRLIFRFL 490
            |......|||..:                   :||.....:.|.|.| |::.|.|:||
Zfish   451 EELSGLPAARKHLNKLRNIRYTFNTVLVVLIWRIFIARSQMARNIWY-FVVSLCFKFL 507

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4020NP_572276.1 FAR-N_SDR_e 12..333 CDD:187547 137/322 (43%)
Sterile 359..451 CDD:460779 26/93 (28%)
far1NP_001429320.1 None

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