DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4020 and Far1

DIOPT Version :9

Sequence 1:NP_001259264.1 Gene:CG4020 / 31522 FlyBaseID:FBgn0029821 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_001011933.1 Gene:Far1 / 293173 RGDID:1306647 Length:515 Species:Rattus norvegicus


Alignment Length:521 Identity:174/521 - (33%)
Similarity:279/521 - (53%) Gaps:49/521 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTIPEAFEDQEIFVTGASGFVGKALIEKLLRSCPKLGRIYVLMRPKKGHTIEERLQLQWESRLYE 65
            ::|||.:|.:.|.:|||:||:||.|:|||||||||:..:|||:|.|.|.|.:||::.....:|::
  Rat     2 VSIPEYYEGKNILLTGATGFLGKVLLEKLLRSCPKVNSVYVLVRQKAGQTPQERVEEILSGKLFD 66

  Fly    66 RLRREQPNARSKLVAIAGDVEQLGLGIGSADLE-RLRNVNIVYHSAASVRFDDALSTAILLNTRG 129
            |||.|.|:.|.|::||..::.|..|.:...|.| .:.:.|:::|.||:|||::.|..|:.||...
  Rat    67 RLRDENPDFRQKIIAINSELTQPKLALSEEDKEIIIDSTNVIFHCAATVRFNENLRDAVQLNVIA 131

  Fly   130 THELVKLALEWPKLKAFVHVSTTYSNPGVLEVEERVYPPLADWRTTIKLAETYDAEILDIFNLKY 194
            |.:|:.||.:...|:.|:||||.|:......::|.||||..|.:..|...|..|..:::....|.
  Rat   132 TRQLILLAQQMKNLEVFMHVSTAYAYCNRKHIDEVVYPPPVDPKKLIDSLEWMDDGLVNDITPKL 196

  Fly   195 GNFQPNTYTFTKSLAEQVVNEYRDRLPIFIFRPSIVVSTIEEPVPGWADNFNGPTGLLVACGVGI 259
            ...:||||.:||:|||.||.:...:|.:.|.|||||.::.:||.|||.||||||:||.:|.|.||
  Rat   197 IGDRPNTYIYTKALAEYVVQQEGAKLNVAIVRPSIVGASWKEPFPGWIDNFNGPSGLFIAAGKGI 261

  Fly   260 LRSQNCDPNIVADFVPADIVARTLITSVYKFMGESKSRAKDSDLYVVNCATANISPITMGEVIDI 324
            ||:.....|.:||.||.|:|..|.:.:.: :.|.::.|    ::.|.||.|.:.:|...|||.|.
  Rat   262 LRTMRASNNALADLVPVDVVVNTSLAAAW-YSGVNRPR----NIMVYNCTTGSTNPFHWGEVGDY 321

  Fly   325 GKTFIRKNPFEKTLWLPGGGMTTCPVLHFVRFCTMHLLM-----------AIVVDTLLRLYNEKP 378
            .....:.||..:....|           :|:|.:.:|::           |:::|..|||..:||
  Rat   322 LNHSFKTNPLNQVFRHP-----------YVKFYSNNLMLHYWKGVKHTVPALLLDLALRLTGQKP 375

  Fly   379 FLMKLQRRIFAAFSALQVFAMTEWHFQNDNFRALHDVVPANEVSNFGFMQHANINYTEFFQHGIR 443
            ::||...|:..|...|:.|....|.:..||...|.:.:...:...|. :....:::.|:.::...
  Rat   376 WMMKTITRLHKAMVFLEYFTSNSWVWNTDNVNMLMNQLNPEDKKTFN-IDVRQLHWAEYIENYCM 439

  Fly   444 GAKEFLLKESPESSSAARFRV-------------------KIFYVLDFLCRGIVYSFLLRLIFRF 489
            |.|:::|.|......|||..:                   :||.....:.|.|.| |::.|.::|
  Rat   440 GTKKYVLNEEMSGLPAARKHLNKLRNIRYGFNTILVILIWRIFIARSQMARNIWY-FVVSLCYKF 503

  Fly   490 L 490
            |
  Rat   504 L 504

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4020NP_001259264.1 FAR-N_SDR_e 12..333 CDD:187547 129/321 (40%)
FAR_C 359..450 CDD:176924 22/101 (22%)
Far1NP_001011933.1 PLN02996 2..446 CDD:215538 160/460 (35%)
FAR-N_SDR_e 11..330 CDD:187547 129/323 (40%)
Sterile 371..447 CDD:281068 16/76 (21%)
Necessary and sufficient for PEX19-mediated localization into peroxisome membrane. /evidence=ECO:0000250|UniProtKB:Q8WVX9 451..507 12/55 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166351492
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3320
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D221518at33208
OrthoFinder 1 1.000 - - FOG0000172
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11011
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X145
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
87.850

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