DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4020 and fard-1

DIOPT Version :9

Sequence 1:NP_001259264.1 Gene:CG4020 / 31522 FlyBaseID:FBgn0029821 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_001370741.1 Gene:fard-1 / 180582 WormBaseID:WBGene00022200 Length:536 Species:Caenorhabditis elegans


Alignment Length:494 Identity:154/494 - (31%)
Similarity:254/494 - (51%) Gaps:19/494 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 TIPEAFEDQEIFVTGASGFVGKALIEKLLRSCPKLGRIYVLMRPKKGHTIEERLQLQWESRLYER 66
            ::.:.:....:.:||.:||:||.::||||.:...:..||:::|.:||...:|||.......|:.|
 Worm     4 SVRDVYAGSSVLLTGGTGFLGKVIVEKLLWTIDDIQNIYLMIRTRKGKNPQERLSGLLHDPLFNR 68

  Fly    67 LRREQPNARSKLVAIAGDVEQLGLGIGSADLERLR-NVNIVYHSAASVRFDDALSTAILLNTRGT 130
            :|:|:|.|..||.||.||:....||:...|:..:| |||:|.||||:|:||:.|..|:.:|..||
 Worm    69 IRQEKPEAFDKLKAIGGDMMVENLGMDPEDVMLIRDNVNVVIHSAATVKFDEHLRAAVTMNVIGT 133

  Fly   131 HELVKLALEWPKLKAFVHVSTTYSNPGVLEVEERVY-PPLADWRTTIKLAETYDAEILDIFNLKY 194
            ..::.|..:...||..|||||.|:|....|..|::| .|:|..:....|: ..|.|.|.....|.
 Worm   134 KRIIDLCHQIKDLKVLVHVSTAYANCDRFETTEKIYKSPMAPQKLVDALS-WMDDETLTKITPKI 197

  Fly   195 GNFQPNTYTFTKSLAEQVVNEYRDRLPIFIFRPSIVVSTIEEPVPGWADNFNGPTGLLVACGVGI 259
            ...:|||||.||:|||..:......:|:.|.|||||.:..:.|:|||.||.|||||:..|.|.|:
 Worm   198 LGLRPNTYTLTKALAESTIETEAKDIPVIIIRPSIVGAMWQGPLPGWTDNINGPTGIFAAVGRGV 262

  Fly   260 LRSQNCDPNIVADFVPADIVARTLITSVYKFMGESKSRAKDSDLYVVNCATANISPITMGEVIDI 324
            |.:........||.:|.||||..:|.|     ...::....:::.|::|::..::|:..|.::..
 Worm   263 LTNMCGSSESKADIIPVDIVANMIIAS-----ASYRTSINTTEIPVIHCSSGELNPLYWGHIVLF 322

  Fly   325 GKTFIRKNPFEKTLWLPGGGMTTCPVLHFVRFCTMHLLMAIVVDTLLRLYNEKPFLMKLQRRIFA 389
            .:.|.:|.|.|:...:|.........|..:.:...|.:.|.:.|...||..::...:||..:::.
 Worm   323 LEQFYKKYPMEQCFAVPSTYFHKSRSLFLINYYIKHHIPAAISDISARLIGKRKNNVKLYSKVWK 387

  Fly   390 AFSALQVFAMTEWHFQNDNFRALHD----VVPANEVS-NFGFMQHANINYTEFFQHGIRGAKEFL 449
            ....|..|....|.|   |.|.|.:    :.||::.. ||...|   :::..:....:.|.|:||
 Worm   388 MIETLHFFTTRGWSF---NARGLPEFFEKMTPADQKEYNFDVRQ---VDWNSYLFDYVMGIKKFL 446

  Fly   450 LKESPESSSAARFRVKIFYVLDFLCRGIVYSFLLRLIFR 488
            |||:.|:.:.:|..:....:...:...|||:..:..|.|
 Worm   447 LKENLENLNRSRAHLLKMRIRRQVIAAIVYAGFISTIGR 485

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4020NP_001259264.1 FAR-N_SDR_e 12..333 CDD:187547 117/322 (36%)
FAR_C 359..450 CDD:176924 22/95 (23%)
fard-1NP_001370741.1 FAR-N_SDR_e 13..331 CDD:187547 117/323 (36%)
Sterile 358..448 CDD:397244 23/95 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160165459
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3320
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0.712175 Normalized mean entropy S3219
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D221518at33208
OrthoFinder 1 1.000 - - FOG0000172
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11011
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X145
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
87.800

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