DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Act5C and ARP2

DIOPT Version :9

Sequence 1:NP_001014725.1 Gene:Act5C / 31521 FlyBaseID:FBgn0000042 Length:376 Species:Drosophila melanogaster
Sequence 2:NP_189336.1 Gene:ARP2 / 822317 AraportID:AT3G27000 Length:389 Species:Arabidopsis thaliana


Alignment Length:379 Identity:168/379 - (44%)
Similarity:253/379 - (66%) Gaps:14/379 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 71
            :|.|||:|..|.||||::.|.:|||.:||||  |::..::....||..||:.....|..|.:.||
plant     7 VVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLMEQQVKDIVVGETCSELRHQLDINYP 71

  Fly    72 IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVA 136
            :.:|||.||||||.:|.|.|||||::.|.:..:|||:.||||..|||||.:.|||.:|...:::.
plant    72 VHNGIVQNWDDMEHVWDHAFYNELKINPSDCKILLTDPPLNPSKNREKMIETMFEKYNFAGVFIQ 136

  Fly   137 IQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 201
            |||||:|||.|..||:|:||||||:|.||:.:||:.||...|:::|||.:|.||:.:|:.|||:.
plant   137 IQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITAYLVDLLSRRGYAM 201

  Fly   202 TTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPS 266
            ..||:.|.||:|||||||::.|:::|......::.|.|:|.||||:||.:|.|||:.|||||.|.
plant   202 NKTADFETVREIKEKLCYISYDYKRESQLGLETTILVKNYTLPDGRVIKVGTERFQAPEALFTPE 266

  Fly   267 FLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEI------TALAPS- 324
            .:.:|..|:.:..:..|.:.|:|.|..||.:.|||||:|||||:..|::|||      |.|..: 
plant   267 LIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRLEKEIQDRYLDTVLKGNK 331

  Fly   325 ----TMKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESGPSIVHR 373
                .::::|..||.||:.|::||::||. :....:.||::::|.|.|.:.:::
plant   332 DGLKKLRLRIEDPPRRKHMVYLGGAVLAGIMKDAPEFWINREDYMEEGINCLNK 385

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Act5CNP_001014725.1 PTZ00281 1..376 CDD:173506 168/379 (44%)
ARP2NP_189336.1 ACTIN 4..387 CDD:214592 168/379 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5277
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D649708at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.910

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