DRSC/TRiP Functional Genomics Resources

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Protein Alignment Act5C and Actl6b

DIOPT Version :9

Sequence 1:NP_001014725.1 Gene:Act5C / 31521 FlyBaseID:FBgn0000042 Length:376 Species:Drosophila melanogaster
Sequence 2:XP_006249182.1 Gene:Actl6b / 288563 RGDID:1307763 Length:444 Species:Rattus norvegicus


Alignment Length:437 Identity:155/437 - (35%)
Similarity:228/437 - (52%) Gaps:67/437 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVM--------VGMGQKDSYVGDEAQ 60
            :||.|||.|.||...:||:||:|.|:...|.....||....:        ||:...:...|.|.:
  Rat     9 DEVGALVFDIGSFSVRAGYAGEDCPKVSLPVPSPYPRGSDTLCQADFPTTVGLLAAEEGGGLELE 73

  Fly    61 ---SKRGIL---------------TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT 107
               .|:|.:               .:..|:::|::.:|:....|..||:...::..|..||||::
  Rat    74 GEKEKKGKIFHIDTNALHVPRDGAEVMSPLKNGMIEDWECFRAILDHTYSKHVKSEPNLHPVLMS 138

  Fly   108 EAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHT--VPIYEGY 170
            |||.|.:|.|||:|::|||.:|.||.::...|||:.:|:||:||:||||  |.:||  :|:::||
  Rat   139 EAPWNTRAKREKLTELMFEQYNIPAFFLCKTAVLTAFANGRSTGLVLDS--GATHTTAIPVHDGY 201

  Fly   171 ALPHAILRLDLAGRDLTDYLMKILTERGYSFT---TTAEREIVRD-------IKEKLCYVA---- 221
            .|...|::..|||..::....::..|......   ..|.:|.||:       .||||..|:    
  Rat   202 VLQQGIVKSPLAGDFISMQCRELFQEMAIDIIPPYMIAAKEPVREGAPPNWKKKEKLPQVSKSWH 266

  Fly   222 --------LDFEQEMATAASSSSLEK--------SYELPDGQVITIGNERFRCPEALFQPS---- 266
                    .||:..:...:.|...|:        .||:|:|.....|.||.|.||.||.||    
  Rat   267 NYMCNEVIQDFQASVLQVSDSPYDEQVAAQMPTVHYEMPNGYNTDYGAERLRIPEGLFDPSNVKG 331

  Fly   267 FLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKII 331
            ..|....|:......||..||:|||..||.:.:::||.|:..|..||:.:|::...|.:|::|:|
  Rat   332 LSGNTMLGVGHVVTTSIGMCDIDIRPGLYGSVIVTGGNTLLQGFTDRLNRELSQKTPPSMRLKLI 396

  Fly   332 A---PPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKC 375
            |   ..|||:|.||||||||||.||||||||||||:|.|...|.|||
  Rat   397 ASNSTMERKFSPWIGGSILASLGTFQQMWISKQEYEEGGKQCVERKC 443

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Act5CNP_001014725.1 PTZ00281 1..376 CDD:173506 155/437 (35%)
Actl6bXP_006249182.1 Actin 11..444 CDD:394979 154/435 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5277
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D649708at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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