DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp30 and UBP8

DIOPT Version :9

Sequence 1:NP_001284912.1 Gene:Usp30 / 31519 FlyBaseID:FBgn0029819 Length:558 Species:Drosophila melanogaster
Sequence 2:NP_013950.1 Gene:UBP8 / 855263 SGDID:S000004836 Length:471 Species:Saccharomyces cerevisiae


Alignment Length:547 Identity:105/547 - (19%)
Similarity:178/547 - (32%) Gaps:229/547 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 QRRGQIAGLHNFGLTCFLNTLLQAMAACPQFI--AWLQLYNN----ASPDR------KSLITSM- 84
            :||..::||.|.|.|||::::||.:...|.||  :..|:::|    .|||:      ..::..: 
Yeast   131 ERRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELY 195

  Fly    85 --LNTLEVVNGTHATLRGDPYSPGAVLRALNALGWVIPQ-----EEHDAHELFHVLLTCLEEEAI 142
              |||.:..:.:.:|.|    ..|.:.  |....|.|.|     .:.||||.:..::..:.:   
Yeast   196 GALNTKQASSSSTSTNR----QTGFIY--LLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQ--- 251

  Fly   143 RPQPLGCLSDALPTDNDDNSSLAGTATPVGGFRSFSSMAAGLGASQRIGDQPNRPSSAMLTDFLN 207
                                                                             
Yeast   252 ----------------------------------------------------------------- 251

  Fly   208 MEYDESTSLQRLVRSEAHTPDSPASVCERDGNDRLGSVLLDAVSPGTPFGFPLVSNPDSLATPML 272
                                                |.:||                        
Yeast   252 ------------------------------------SYVLD------------------------ 256

  Fly   273 GGERSSRPRLPQSQQQQDEGLNRRVSSSCRSLERLHRGPGRVSIWSNMMPSQVAHPFQGAMGAQI 337
                     ||.:::     ::|..:..|..:                    |...|:|::.:.|
Yeast   257 ---------LPNAKE-----VSRANNKQCECI--------------------VHTVFEGSLESSI 287

  Fly   338 VCNGCGSKSAVRYDKFDSITLNLPPQRRTGLSLGHLLSEYITSEDLSDVK--CDSCNETTTHTKS 400
            ||.||.:.|....|.|..::|::..:::    |...|..:...|.|.|..  |..||.|....|.
Yeast   288 VCPGCQNNSKTTIDPFLDLSLDIKDKKK----LYECLDSFHKKEQLKDFNYHCGECNSTQDAIKQ 348

  Fly   401 VTFAKLPACLCIHVARTVWLPTGQVCKRKDYVHFPESLSMAPY-SFVQPHLNSQAGTPWGSTMSL 464
            :...|||:.|.:.:.|...|..|...|..|::.||..|:|..| |..:...:|:.|         
Yeast   349 LGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFPTYLNMKNYCSTKEKDKHSENG--------- 404

  Fly   465 YSSSLPMNNGVGGGEGFGTMFPKNLYRLLAVVVHSGEANSGHFVTYRRGSLRNAHRWYYTSDTIV 529
                               ..|..:|.|:.:|.|.|..|.||::.:.:.|   ..:|:..:|::|
Yeast   405 -------------------KVPDIIYELIGIVSHKGTVNEGHYIAFCKIS---GGQWFKFNDSMV 447

  Fly   530 REVSIDEVLSVPAYLLFYDRGQQRQLN 556
            ..:|.:|||...||||||   ..||:|
Yeast   448 SSISQEEVLKEQAYLLFY---TIRQVN 471

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp30NP_001284912.1 Peptidase_C19 39..>139 CDD:271592 31/119 (26%)
UCH <304..547 CDD:278850 60/245 (24%)
Peptidase_C19F <323..548 CDD:239127 61/227 (27%)
UBP8NP_013950.1 zf-UBP 46..108 CDD:396634
Peptidase_C19D 138..466 CDD:239125 100/533 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1867
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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