DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp30 and UBP16

DIOPT Version :9

Sequence 1:NP_001284912.1 Gene:Usp30 / 31519 FlyBaseID:FBgn0029819 Length:558 Species:Drosophila melanogaster
Sequence 2:NP_567705.1 Gene:UBP16 / 828558 AraportID:AT4G24560 Length:1008 Species:Arabidopsis thaliana


Alignment Length:522 Identity:96/522 - (18%)
Similarity:146/522 - (27%) Gaps:224/522 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 QIAGLHNFGLTCFLNTLLQAMAACPQFIAWL--QLYNNASPDRKSLITSMLNTLEVVNGTHATLR 99
            |..||.|.|.:||.|.:.|.:...|....:.  |.::.|...::...|.....|.|    .|...
plant   540 QPCGLINVGNSCFANVVFQCLMFTPPLTTYFLQQFHSRACTKKEQCFTCGFEKLVV----KAKEE 600

  Fly   100 GDPYSPGAVLRALNALGWVIPQ-EEHDAHELFHVLLTCLEEEAIRPQPLGCLSDALPTDNDDNSS 163
            ..|.||..:|..|..:|..:.. :|.||||....::..::...|:..                  
plant   601 KSPLSPNGLLSQLQNIGIFLGNGKEEDAHEFLRFVVDTMQSVCIKAS------------------ 647

  Fly   164 LAGTATPVGGFRSFSSMAAGLGASQRIGDQPNRPSSAMLTDFLNMEYDESTSLQRLVRSEAHTPD 228
                                                         |||.:.|             
plant   648 ---------------------------------------------EYDMTKS------------- 654

  Fly   229 SPASVCERDGNDRLGSVLLDAVSPGTPFGFPLVSNPDSLATPMLGGERSSRPRLPQSQQQQDEGL 293
                           |.|.|....|..||                                    
plant   655 ---------------SKLEDTTLIGLTFG------------------------------------ 668

  Fly   294 NRRVSSSCRSLERLHRGPGRVSIWSNMMPSQVAHPFQGAMGAQIVCNGCGSKSAVRYDKFDSITL 358
                                                 |.:.::|.|..|..||.:| :|...:|:
plant   669 -------------------------------------GYLRSKIKCMKCQVKSELR-EKMMDLTV 695

  Fly   359 NLPPQRRTGLSLGHLLSEYITSEDL---SDVKCDSCNETTTHTKSVTFAKLPACLCIHVARTVWL 420
            .:.....|   |...|..:..:|.|   :..:|.||.......|.:...:.|..|.|.:.|   .
plant   696 EIDGDIST---LDDALRRFTRTEILDGENKYRCGSCKSYERAKKKLKITEPPNVLTIALKR---F 754

  Fly   421 PTGQVCKRKDYVHFPESLSMAPYSFVQPHLNSQAGTPWGSTMSLYSSSLPMNNGVGGGEGFGTMF 485
            ..|:..|....:.|||:|.:|||                               |.||..     
plant   755 QAGKFGKLNKLIRFPETLDLAPY-------------------------------VSGGSE----- 783

  Fly   486 PKNLYRLLAVVVHSGEAN---SGHFVTYRRGSLRNAHRWYYTSDTIVREVSIDEVLSVPAYLLFY 547
            ..:.|:|..|:||....|   |||:|.|    :||.::||...|:.|....::.:|:..||:|||
plant   784 KSHDYKLYGVIVHLDVMNAAFSGHYVCY----IRNQNKWYKADDSTVVTSDVERILTKGAYMLFY 844

  Fly   548 DR 549
            .|
plant   845 AR 846

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp30NP_001284912.1 Peptidase_C19 39..>139 CDD:271592 26/102 (25%)
UCH <304..547 CDD:278850 55/248 (22%)
Peptidase_C19F <323..548 CDD:239127 56/230 (24%)
UBP16NP_567705.1 zf-MYND 74..111 CDD:396356
Peptidase_C19 541..845 CDD:351799 93/518 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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