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Protein Alignment Usp30 and UBP1

DIOPT Version :9

Sequence 1:	NP_001284912.1	Gene:	Usp30 / 31519	FlyBaseID:	FBgn0029819	Length:	558	Species:	Drosophila melanogaster
Sequence 2:	NP_565753.1	Gene:	UBP1 / 817839	AraportID:	AT2G32780	Length:	1083	Species:	Arabidopsis thaliana

Alignment Length:	469	Identity:	106/469 - (22%)
Similarity:	171/469 - (36%)	Gaps:	142/469 - (30%)

- Green bases have known domain annotations that are detailed below.

  Fly   138 EEEAIRPQPLGCLSDA--LPTDNDDNSSLAGTATPVGGFRSFSSMAAGLGASQRIGDQPNRPSSA 200
            |....||.....:|:|  :....:|.:..||....   |.||.|     |.::|..|
plant   699 ERPFFRPLSKSEVSEAGFMAVSGNDKTVRAGKGET---FSSFMS-----GDNERNID-------- 747

  Fly   201 MLTDFLNMEYDESTSLQRLVRSEAHTPDSPASVCERD----GNDRLGSVLLDAVSPGTPFGFPLV 261
             ..:|.|..:|:..:.:|.|    ..|.|.|.|.|..    .:|...:||.::.||        |
plant   748 -YVEFTNRIFDDRGTSERPV----FGPPSKAKVSEAGFVAVSSDSDPAVLDESDSP--------V 799

  Fly   262 SNPDSLAT----PMLGGER-------SSRPRLPQSQQQQ--DEGLNRR----------------- 296
            |....||.    .:|..:.       |...:|.:.::::  .|||:.|
plant   800 SVDRCLAQFTKHEILSEDNAWHCENCSKNLKLQRLREKRRTKEGLSNRWVNENGASSAFDECRDS 864

  Fly   297 -VSSSCRSLERLHRGPGRVSIWSNMMPSQVAHPFQGAMGAQIVCNGCGSKSAVRYDKFDSITLNL 360
             ::.||..||..::....::...|....:.|           :.:|...:...:.....|:|
plant   865 SLNQSCIDLENGYKAAPPITKLPNCKEEESA-----------IDDGFVGEENTKQAPITSVT--- 915

  Fly   361 PPQRRTGLSLGHLLSEYITSEDLSDVKCDSCNETTTHT----------KSVTFAKLPACLCIHVA 415
                .|.| ||   .|.|:|:..||.:|::..:....:          |.|...|.|..|.||:.
plant   916 ----ETPL-LG---GETISSQPASDNECENWEDLAVDSEEVIVKRDARKKVLINKAPPVLTIHLK 972

  Fly   416 RTVWLPTGQVCKRKDYVHFPESLSMAPYSFVQPHLNSQAGTPWGSTMSLYSSSLPMNNGVGGGEG 480
            |......|:|.|...:|.|.|.:.::.|...:   .|:...|
plant   973 RFSQDARGRVSKLSGHVDFQEFIDLSKYMDTR---CSEEDEP----------------------- 1011

  Fly   481 FGTMFPKNLYRLLAVVVHSGEANSGHFVTYRRGSLR----------NAHRWYYTSDTIVREVSID 535
                    :|||..:|.|.|..:.||:|:|.||..:          |:..||:.||:.||..|::
plant  1012 --------VYRLAGLVEHLGAMSRGHYVSYIRGGHKERRDSDTKEPNSSIWYHASDSQVRPASLE 1068

  Fly   536 EVLSVPAYLLFYDR 549
            |||...||:|||:|
plant  1069 EVLRSEAYILFYER 1082

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.