DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp30 and usp49

DIOPT Version :9

Sequence 1:NP_001284912.1 Gene:Usp30 / 31519 FlyBaseID:FBgn0029819 Length:558 Species:Drosophila melanogaster
Sequence 2:NP_001038361.1 Gene:usp49 / 559473 ZFINID:ZDB-GENE-050208-484 Length:649 Species:Danio rerio


Alignment Length:572 Identity:110/572 - (19%)
Similarity:182/572 - (31%) Gaps:235/572 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 SRLRQRRGQIAGLHNFGLTCFLNTLLQAMAACPQFIAWLQLYNNASPDRKSLIT-SMLNTLEVV- 91
            :|.|:....:.||.|.|.||::|::||.::...:|             |:..:| .:..|.|:: 
Zfish   255 ARRRKLAPGVTGLRNLGNTCYMNSILQVLSHLQKF-------------RECFLTLDLCETEELLA 306

  Fly    92 NGTH----ATLRGDPYSPGAVLRALNALGWVIPQEE--------HDAHELFHVLLTCLEEEAIRP 144
            ...|    |...|.....|.|..:|.:.....|:..        |:.|.||.|:           
Zfish   307 KSNHPQVGALSAGGGGGGGGVPSSLQSAEQKEPRSSSRQQVSLCHELHTLFRVM----------- 360

  Fly   145 QPLGCLSDALPTDNDDNSSLAGTATPVGGFRSFSSMAAGLGASQRIGDQPNRPSSAMLTDFLNM- 208
                               .:|..:.|..|                         |||....|: 
Zfish   361 -------------------WSGRWSLVSPF-------------------------AMLHSVWNLI 381

  Fly   209 ----EYDESTSLQRLVRSEAHTPDSPASVCERDGNDRLGSVLLDAVSPGTPFGFPLVSNPDSLAT 269
                .||:.              |:...:||          |||.|....               
Zfish   382 PAFRGYDQQ--------------DAQEFLCE----------LLDKVQQEL--------------- 407

  Fly   270 PMLGGERSSRPR----LPQSQQQQDEGLNRRVSSSCRSLERLHRGPGRVSIWSNMMPSQVAHPFQ 330
                  .|..||    :|.:|::    |:::|.....::                        |.
Zfish   408 ------ESDAPRKHFLIPITQRK----LSKQVLKVLNTI------------------------FH 438

  Fly   331 GAMGAQIVCNGCGSKSAVRYDKFDSITLNLPPQR-----------RTGLSLGHLLSEYITSEDLS 384
            |.:.:|:.|..|..||.. .:.|..::|..|.:.           :...||..:|:::..:|.|.
Zfish   439 GQLLSQVTCLSCKRKSNT-VEPFWDLSLEFPERYHRMEKPSAAACQRSCSLSEMLAKFTETEALE 502

  Fly   385 D--VKCDSCN---ETTTH--------TKSVTFAKLPACLCIHVARTVWLPTGQVCKRKDYVH--F 434
            .  ..|:.||   ..::|        .|.:...:||..|.:|:.|..|  :|:..:.|..||  |
Zfish   503 GCIYACNFCNRKRRKSSHKPLSLSEACKQLLICRLPQVLRLHLKRFRW--SGRNHREKIGVHVAF 565

  Fly   435 PESLSMAPYSFVQPHLNSQAGTPWGSTMSLYSSSLPMNNGVGGGEGFGTMFPKNLYRLLAVVVHS 499
            .:.|::.||.........:|.|                                 |.|.|||:|.
Zfish   566 DQVLNIQPYCSCSDAAAREAYT---------------------------------YDLSAVVMHH 597

  Fly   500 GEA-NSGHFVTY---RRGSLRNAHRWYYTSDTIVREVSIDEVLSVPAYLLFY 547
            |:. .|||:..|   ..|..     |.:.:|:.:...|::||.|..||:|||
Zfish   598 GKGFGSGHYTAYCYNTEGGF-----WVHCNDSEMNVCSVEEVCSTQAYILFY 644

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp30NP_001284912.1 Peptidase_C19 39..>139 CDD:271592 26/113 (23%)
UCH <304..547 CDD:278850 57/272 (21%)
Peptidase_C19F <323..548 CDD:239127 59/255 (23%)
usp49NP_001038361.1 zf-UBP 26..87 CDD:280334
UCH 264..644 CDD:278850 106/561 (19%)
Peptidase_C19 266..645 CDD:271592 108/561 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1867
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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