DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Usp30 and Usp1

DIOPT Version :9

Sequence 1:NP_001284912.1 Gene:Usp30 / 31519 FlyBaseID:FBgn0029819 Length:558 Species:Drosophila melanogaster
Sequence 2:NP_001263061.1 Gene:Usp1 / 43462 FlyBaseID:FBgn0028476 Length:1078 Species:Drosophila melanogaster


Alignment Length:639 Identity:117/639 - (18%)
Similarity:197/639 - (30%) Gaps:227/639 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 FWGPSGSRLRQRRGQIAGLH----------------NFGLTCFLNTLLQAMAACPQFI------- 64
            ::||:|.  ....|..|||:                |.|.:|:||:::..:...|.|:       
  Fly   285 YYGPNGG--SNAAGAGAGLNGSAAALNHAPSMGTLCNIGNSCYLNSVVYTLRFAPHFLHNLHHLI 347

  Fly    65 ----------------------------------AW------------------LQLYNNASPDR 77
                                              :|                  :...|..|...
  Fly   348 QDLNVVQQTIVRQQTARSASLGKNVSAAQLEHARSWSSKDLATSTDQYSGQNGGVNSGNGGSGSS 412

  Fly    78 KSLITSMLNTL-EVVNGTHATLRGD---PYSPGAVLRALNALGWVIP-QEEHDAHELFHVLLTCL 137
            ||...|:...| |:.|..|.....|   ||....:|.|:..:..... .::.||||....:|.|:
  Fly   413 KSTHQSVTEKLHELYNNLHGNEMADSTEPYHADTLLHAIQDVNATFEGNQQQDAHEFLMCVLNCI 477

  Fly   138 EE------EAIR--PQPLGCLSDALPTDNDDNSSLAGTATPVGGFRSFSSMAAGLGASQRIGDQP 194
            .|      :||.  |:.:.....|.|.:.|         |..|..|:.|:.:..|.|..  |...
  Fly   478 RETNQSLIKAIGECPEVIANGYIANPDEVD---------TGEGQDRTDSTASQNLNAGN--GSLA 531

  Fly   195 NRPSSAMLTDFLN--------MEYDESTSLQRLVRSEAHTPD--SPASVCERDGND--RLGSVLL 247
            ...::...|.|.:        ::..:||.:|..::..:.|..  :.|.......|.  .|.:|.|
  Fly   532 TSQTTTTKTSFFSRKSKRKDEVKPSKSTRVQSPLKENSPTAGGITGAGTAHATANSLFYLNTVDL 596

  Fly   248 DAVS----PGTPFGFPLVSNPDSLATPMLGGERSSRPRLPQSQQQQDE-GLNRRVSS-------- 299
            ...|    ..:.....:||...:|.||....:.||...:..:...:|: .|..|:..        
  Fly   597 SGASSTSGSASTSASGVVSTSAALPTPPQATKYSSDDEMNSATVLKDKMRLEERIRELNLNFFSS 661

  Fly   300 -------------SCRSLERLHRGPGRVSIWSNMMPSQVAHPFQGAMGAQIVCNGCGSKSAVRYD 351
                         ||.::.|..:|         |:...|..|..|                  ||
  Fly   662 DFEGIVVLTTKCLSCETITRQKQG---------MLDISVPVPISG------------------YD 699

  Fly   352 KFDSITLNLPPQRRTGLSLGHLLSEYITSEDLSDVKCDSCNETTTHTKSVTFAKLPACLCIHVAR 416
            ..|     |..:..|.:....:..||...|  :...|:.|...|...:|:::..||..|.|.:.|
  Fly   700 NAD-----LQDKPSTYIQNSCITKEYFRGE--NKYSCNQCTGYTEAIRSISYEVLPRLLVIQLNR 757

  Fly   417 TVWLPTGQVCKRKDYVHFPESLSMAPYSFVQPHLNSQAGTPWGSTMSLYSSSLPMNNGVGGGEGF 481
            .    :|.:.|...||         |.:|..|              ...::...:      ||| 
  Fly   758 F----SGGMEKVSTYV---------PTTFTLP--------------CFCATCCEL------GEG- 788

  Fly   482 GTMFPKNLYRLLAVVVHSGEA-NSGHFVTY----------------RRGSLRNA 518
               ...::|:|.:|:.|.|.. ..||::.|                ||.::.|:
  Fly   789 ---NKLHVYKLYSVITHVGATLTVGHYIAYTCFLDLASDYVNCPKDRRNTMTNS 839

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp30NP_001284912.1 Peptidase_C19 39..>139 CDD:271592 31/179 (17%)
UCH <304..547 CDD:278850 44/232 (19%)
Peptidase_C19F <323..548 CDD:239127 41/213 (19%)
Usp1NP_001263061.1 Peptidase_C19 308..819 CDD:271592 107/592 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45456842
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24006
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.030

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