DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp30 and Usp12-46

DIOPT Version :9

Sequence 1:NP_001284912.1 Gene:Usp30 / 31519 FlyBaseID:FBgn0029819 Length:558 Species:Drosophila melanogaster
Sequence 2:NP_651099.1 Gene:Usp12-46 / 42702 FlyBaseID:FBgn0039025 Length:424 Species:Drosophila melanogaster


Alignment Length:554 Identity:115/554 - (20%)
Similarity:183/554 - (33%) Gaps:182/554 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 GSRLRQRRGQIAGLHNFGLTCFLNTLLQAMAACPQFIAWLQLYNNASPDRKSLITSMLNTLEVVN 92
            ||.|........||.|||.||:.|::|||:..|..|...:..|...:...|..:.|.|..|.   
  Fly    13 GSDLFPPNEHYFGLVNFGNTCYSNSVLQALYFCKPFREKVLEYKAKNKRPKETLLSCLADLF--- 74

  Fly    93 GTHATLRGDPYSPGAVLRALNALGWVIPQE----------------EHDAHELFHVLLTCLEEEA 141
                      ||   :......:|.:.|::                :.||||..:.|:..:.|..
  Fly    75 ----------YS---IATQKKKVGSIAPKKFITRLRKEKEEFDNYMQQDAHEFLNFLINHINEII 126

  Fly   142 IRPQPLGCLSDALPTDNDDNSSLAGTATPVGGFRSFSSMAAGLGASQRIGDQPNRPSSAMLTDFL 206
            :..:..|      |::.:..      ||..||  |.|:||:.:.:........|..|::      
  Fly   127 LAERNAG------PSNGNPK------ATNQGG--STSAMASSIASKSSSTSNSNSNSNS------ 171

  Fly   207 NMEYDESTSLQRLVRSEAHTPDSPASVCERDGNDRLGSVLLDAVSPGTPFGFPLVSNPDSLATPM 271
                               |.:|..:.....|:....:.:|||....|....|::|         
  Fly   172 -------------------TTNSNGNSSNSTGSLNANTSVLDASGSLTATTTPIIS--------- 208

  Fly   272 LGGERSSRPRLPQSQQQQDEGLNRRVSSSCRSLERLHRGPGRVSIWSNMMPSQVAHPFQGAMGAQ 336
                                                  |.|..:..:|..|:.|...|||.:.::
  Fly   209 --------------------------------------GNGTGTNGANSEPTWVHEIFQGILTSE 235

  Fly   337 IVCNGCGSKSAVRYDKFDSITLNLPPQRRTGLSLGHLLSEYITSEDL-SD--VKCDSCNETTTHT 398
            ..|..|.:.|:...:.||   |.:...:.|  |:.|.|..:..:|.| ||  .|||:|.......
  Fly   236 TRCLNCETVSSKDENFFD---LQVDVDQNT--SITHCLRCFSNTETLCSDNKFKCDNCCSYQEAQ 295

  Fly   399 KSVTFAKLPACLCIHVARTVWLPT-GQVCKRKDYVHFPESLSMAPYSFVQPHLNSQAGTPWGSTM 462
            |.:...|||..|.:|:.|..::.. .:..|....|.||..|                        
  Fly   296 KRMRVKKLPMILALHLKRFKYMEQFNRHIKVSHRVVFPLEL------------------------ 336

  Fly   463 SLYSSSLPMNNGVGGGEGFGTMFPKNLYRLLAVVVHSGEA-NSGHFVTYRRGSLRNAH-RWYYTS 525
            .|:::|....|            |..||.|.|||:|.|.. |.||::     |:..:| .|....
  Fly   337 RLFNTSDDAVN------------PDRLYDLTAVVIHCGSGPNRGHYI-----SIVKSHGLWLLFD 384

  Fly   526 DTIVREVSIDEV------------LSVPAYLLFY 547
            |.:|.::....:            .|...|:|||
  Fly   385 DDMVDKIEASTIEDFYGLTSDIHKSSETGYILFY 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp30NP_001284912.1 Peptidase_C19 39..>139 CDD:271592 27/115 (23%)
UCH <304..547 CDD:278850 61/260 (23%)
Peptidase_C19F <323..548 CDD:239127 59/243 (24%)
Usp12-46NP_651099.1 Peptidase_C19G 25..419 CDD:239128 112/542 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24006
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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