DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp30 and DUBAI

DIOPT Version :9

Sequence 1:NP_001284912.1 Gene:Usp30 / 31519 FlyBaseID:FBgn0029819 Length:558 Species:Drosophila melanogaster
Sequence 2:NP_610784.1 Gene:DUBAI / 36361 FlyBaseID:FBgn0033738 Length:852 Species:Drosophila melanogaster


Alignment Length:540 Identity:112/540 - (20%)
Similarity:179/540 - (33%) Gaps:168/540 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 WGPSGSRLRQRRGQIAGLHNFGLTCFLNTLLQAMAACPQFIAWLQLYNNASPDRKSLITSMLNTL 88
            ||        ||....||.|.|.||::|::|||:|....|...:.|....|       ..::...
  Fly   351 WG--------RRNARVGLVNLGNTCYMNSVLQALAMTSDFSRQILLIECNS-------VLLMKVQ 400

  Fly    89 EVVNGTHATLRGDPYSPGAVLRALNALGWVIPQEEHDAHELFHVLLTCLEEEAIRPQPLGCLSDA 153
            :.:...|.:||.: .:|..||.|.....:. |..:.|:.|....||..|.|..|           
  Fly   401 QQIALMHHSLRYE-LTPSRVLNATRPPSFT-PGLQQDSSEFLGYLLDLLHEHEI----------- 452

  Fly   154 LPTDNDDNSSLAGTATPVGGFRSFSSMAAGLGASQRIGDQPNRPSSAMLTD----FLNMEYDEST 214
                  ::||:.|.:  ||..::          .:.:.|.|...|..:|:.    :.:.:::.|:
  Fly   453 ------NSSSVTGHS--VGPPKT----------GREVDDVPALLSEDILSSGVIPYNSKDHELSS 499

  Fly   215 SLQRLVRSEAHTPDSPASVCERDGNDRLGSVLLDAVSPGTPFGFPLVSNPDSLATPMLGGERSSR 279
            .......:...||..||                      ||             |....|     
  Fly   500 GSNSDNCNHKPTPTPPA----------------------TP-------------TKATNG----- 524

  Fly   280 PRLPQSQQQQDEGLNRRVSSSCRSLERLHRGPGRVSIWSNMMPSQVAHPFQGAMGAQIVCNGCGS 344
              |.|..||.|:.                           ..||.:...|.|.:.....|..||.
  Fly   525 --LKQQGQQVDQA---------------------------KPPSTIDKTFAGKLSTTYRCLNCGW 560

  Fly   345 KSAVRYDKFDSITLNLPPQRR----TGLSLGHLLSEYITSEDL---SDVKCDSCNETTTHTKSVT 402
            :|. ..|.|..:.|:.|..:.    |..|:..|:..|.:.|.|   :...|..|.:.....:.:.
  Fly   561 ESR-NEDSFRELQLSFPDDKEDCGATNYSVQDLIEYYCSPEKLDGDNQYFCPQCKKLCDAERHIG 624

  Fly   403 FAKLPACLCIHVARTVWLPTGQVCKRKDYVHFPESLSMAPYSFVQPHLNSQAGTPWGSTMSLYSS 467
            ..:.|..|.:         |.:..|.....||...|       :....:.::.|   ..||...|
  Fly   625 VTQAPKNLIL---------TLKQFKYDQKYHFRTKL-------MHKVFHDESVT---VKMSAKDS 670

  Fly   468 SLPMNNGVGGGEGFGTMFPKNLYRLLAVVVHSG-EANSGHFVTYRRGSLRNAHRWYYTSDTIVRE 531
            ...|:          |:.    |.|.|.|||:| ..:|||:.|:.....:|   ||..:|.:|..
  Fly   671 LQEMS----------TVH----YDLYAGVVHAGYSMDSGHYFTFAADQAKN---WYKFNDNVVTH 718

  Fly   532 VSIDEV--LSVP--AYLLFY 547
            ...:|:  |:.|  .|:|||
  Fly   719 SKPEEMHNLTSPNTPYILFY 738

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp30NP_001284912.1 Peptidase_C19 39..>139 CDD:271592 27/99 (27%)
UCH <304..547 CDD:278850 54/254 (21%)
Peptidase_C19F <323..548 CDD:239127 55/237 (23%)
DUBAINP_610784.1 UCH 358..738 CDD:278850 106/523 (20%)
Peptidase_C19H 359..739 CDD:239129 108/524 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45456885
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24006
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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