DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp30 and Usp2

DIOPT Version :9

Sequence 1:NP_001284912.1 Gene:Usp30 / 31519 FlyBaseID:FBgn0029819 Length:558 Species:Drosophila melanogaster
Sequence 2:NP_001285528.1 Gene:Usp2 / 33132 FlyBaseID:FBgn0031187 Length:950 Species:Drosophila melanogaster


Alignment Length:536 Identity:107/536 - (19%)
Similarity:172/536 - (32%) Gaps:213/536 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 SGSRLRQRRGQIAGLHNFGLTCFLNTLLQAMAACPQFIAWLQLYNNASPDRKSLITSMLNTLEVV 91
            |.||..:..| :.||.|.|.|||:|:::|.::...:...:|:.::.:    :||.|.        
  Fly   614 SSSRDEKSEG-LCGLRNIGNTCFMNSVIQCLSHTQELTRFLRSHHGS----RSLSTK-------- 665

  Fly    92 NGTHATLRGDPYSPGAVLRALNALGWVIPQEEHDAHELFHVLLTCLEEEAIRPQPLGCLSDALPT 156
                                              ..::.|.....::|              :.|
  Fly   666 ----------------------------------DQQILHEFAKLIQE--------------MWT 682

  Fly   157 DNDDNSSLAGTATPVGGFRSFSSMAAGLGASQRIGDQPNRPSSAMLTDFLNMEYDESTSLQRLVR 221
            .|      ..|.||:...|:||:      ..:...|...:.:...|..||               
  Fly   683 AN------VHTVTPMELKRAFST------KHRMYSDYNQQDAQEFLRFFL--------------- 720

  Fly   222 SEAHTPDSPASVCERDGNDRLGSVLLDAVSPGTPFGFPLVSNPDSLATPMLGGERSSRPRLPQSQ 286
                              |.|.|.|...|...|      ::..|:|:                ..
  Fly   721 ------------------DSLHSALNSGVKGET------LNIDDNLS----------------DN 745

  Fly   287 QQQD---EGLNRRVSSSCRSLERLHRGPGRVSIWSNMMPSQVAHPFQGAMGAQIVCNGCGSKSAV 348
            ::.|   |...|..:|..|.|                        |.|.:.:.:.|..||:.| |
  Fly   746 KKADLTWEWYTRHENSLVRDL------------------------FVGQLKSTLKCTTCGNTS-V 785

  Fly   349 RYDKFDSITLNLPPQRRTGLSLGHLLSEYITSEDLSDVKCDSCNETTTH---TKSVTFAKLPACL 410
            .:|.|..:::.||...|..|..  .|..:|..|.|...:..:|.:..|.   |||.|..:.|..|
  Fly   786 TFDPFWDLSVPLPSSSRCKLEA--CLDLFIREEVLDGDEMPTCAKCKTRRKCTKSFTIQRFPKYL 848

  Fly   411 CIHVAR---TVWLPTGQVCKRKDYVHFPES---LSMAPYSFVQPHLNSQAGTPWGSTMSLYSSSL 469
            .||:.|   |.|      .|..:.|.||.|   |:|..|.     .||                 
  Fly   849 VIHLKRFSETRW------SKLSNIVEFPTSDSELNMGSYG-----ANS----------------- 885

  Fly   470 PMNNGVGGGEGFGTMFPKNLYRLLAVVVHSGEANSGHFVTYRRGSLRNAHRWYYTSDTIVRE-VS 533
              |:.|.             |.|.|:..|.|....||:|...:..:  :.:|:..:|.||.: :|
  Fly   886 --NSNVH-------------YSLYAISNHMGSTAGGHYVALCKHPV--SRKWHEFNDNIVSDALS 933

  Fly   534 IDEVLSVPAYLLFYDR 549
            .:.::|..||:|||:|
  Fly   934 ENHLVSSSAYILFYER 949

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp30NP_001284912.1 Peptidase_C19 39..>139 CDD:271592 14/99 (14%)
UCH <304..547 CDD:278850 60/252 (24%)
Peptidase_C19F <323..548 CDD:239127 60/234 (26%)
Usp2NP_001285528.1 UCH 624..947 CDD:278850 100/521 (19%)
Peptidase_C19R 626..948 CDD:239139 101/520 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45456911
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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