DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp30 and Usp22

DIOPT Version :10

Sequence 1:NP_572274.1 Gene:Usp30 / 31519 FlyBaseID:FBgn0029819 Length:558 Species:Drosophila melanogaster
Sequence 2:NP_001178573.1 Gene:Usp22 / 303201 RGDID:1310354 Length:525 Species:Rattus norvegicus


Alignment Length:564 Identity:118/564 - (20%)
Similarity:170/564 - (30%) Gaps:224/564 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 FVFWGPSGSRL-----RQRRGQIA--------GLHNFGLTCFLNTLLQAMAACPQ----FIAWLQ 68
            |..|.|:...|     ..:|.:|.        ||.|.|.|||:|.::||:...|.    |::...
  Rat   145 FSTWEPTKRELELLKHNPKRRKITSNCTIGLRGLINLGNTCFMNCIVQALTHTPLLRDFFLSDRH 209

  Fly    69 LYNNASPDRKSLITSMLNTLEVVNGTHATLRGDPYSPGAVLRALNALGW-----VIPQEEHDAHE 128
            .....||. ..|:..|.:..:.....|.:    |:.|..:|.    |.|     :...|:.||||
  Rat   210 RCEMQSPS-SCLVCEMSSLFQEFYSGHRS----PHIPYKLLH----LVWTHARHLAGYEQQDAHE 265

  Fly   129 LFHVLLTCLE---------EEAIRPQPLGCLSDALPTDNDDNSSLAGTATPVGGFRSFSSMAAGL 184
            .....|..|.         ::|..|....|:.|.:.|               ||.:|..:.....
  Rat   266 FLIAALDVLHRHCKGDDNGKKANNPNHCNCIIDQIFT---------------GGLQSDVTCQVCH 315

  Fly   185 GASQRIGDQPNRPSSAMLTDFLNMEYDESTSLQRLVRSEAHTPDSPASVCERDGNDRLGSVLLDA 249
            |.|..|                                                 |....:.||.
  Rat   316 GVSTTI-------------------------------------------------DPFWDISLDL 331

  Fly   250 VSPGTPFGFPLVSNPDSLATPMLGGERSSRPRLPQSQQQQDEGLNRRVSSSCRSLERLHRGPGRV 314
            ....||| :||  :|.|..:.:.|...:|               .....:.|  |.|..|     
  Rat   332 PGSSTPF-WPL--SPGSEGSVVNGESHAS---------------GTTTLTDC--LRRFTR----- 371

  Fly   315 SIWSNMMPSQVAHPFQGAMGAQIVCNGCGSKSAVRYDKFDSITLNLPPQRRTGLSLGHLLSEYIT 379
                                                           |:        ||.|.   
  Rat   372 -----------------------------------------------PE--------HLGSS--- 378

  Fly   380 SEDLSDVKCDSCNETTTHTKSVTFAKLPACLCIHVARTVWLPTGQVCKRK--DYVHFPESLSMAP 442
                :.:||..|:.....||.:|..|||...|.|:.|   .......:||  .||.||..|.|.|
  Rat   379 ----AKIKCSGCHSYQESTKQLTMKKLPIVACFHLKR---FEHSAKLRRKITTYVSFPLELDMTP 436

  Fly   443 Y--SFVQPHLNSQAGTPWGSTMSLYSSSLPMNNGVGGGEGFGTMFPKNLYRLLAVVVHSGEANSG 505
            :  |..:..:|.|...|..|          :||             .|.|.|.|||.|.|...||
  Rat   437 FMASSKESRMNGQYQQPLDS----------LNN-------------DNKYSLFAVVNHQGTLESG 478

  Fly   506 HFVTYRRGSLRNAHRWYYTSDTIVREVSIDEVLSVPAYLLFYDR 549
            |:.::.|   ::..:|:...|.|:.:.||.:||....|||||.:
  Rat   479 HYTSFIR---QHKDQWFKCDDAIITKASIKDVLDSEGYLLFYHK 519

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp30NP_572274.1 Peptidase_C19 39..>139 CDD:470612 29/125 (23%)
Peptidase_C19F <323..548 CDD:239127 55/228 (24%)
Usp22NP_001178573.1 zf-UBP 63..123 CDD:460464
Peptidase_C19D 176..518 CDD:239125 111/530 (21%)
Blue background indicates that the domain is not in the aligned region.

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