DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp30 and Usp27x

DIOPT Version :10

Sequence 1:NP_572274.1 Gene:Usp30 / 31519 FlyBaseID:FBgn0029819 Length:558 Species:Drosophila melanogaster
Sequence 2:NP_001388057.1 Gene:Usp27x / 302566 RGDID:1564628 Length:438 Species:Rattus norvegicus


Alignment Length:429 Identity:103/429 - (24%)
Similarity:146/429 - (34%) Gaps:130/429 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   175 RSFSSMAAGLGASQRIGDQPNRPSSAMLTDFLNMEYDESTSLQRLVRSEAHTPD------SPASV 233
            |..||...||.....:|:          |.|:|.          :|::..|||.      |....
  Rat    68 RIASSFTIGLRGLINLGN----------TCFMNC----------IVQALTHTPILRDFFLSDRHR 112

  Fly   234 CERDGNDRLGSVLLDAVSPGTPFGFPLVSNPDSLATPMLGGERSSRPRLPQS------------- 285
            ||....:                 ..||....||...:..|..|  |.:|..             
  Rat   113 CEMPSPE-----------------LCLVCEMSSLFRELYSGNPS--PHVPYKLLHLVWIHARHLA 158

  Fly   286 ---QQQQDEGLNRRVSSSCRSLERLHR-----GPGRVSIWSNMMPSQVAHPFQGAMGAQIVCNGC 342
               ||...|.|       ..:|:.|||     ..|:|:...|.....:...|.|.:.:.:.|..|
  Rat   159 GYRQQDAHEFL-------IAALDVLHRHCKGDDVGKVASNPNHCNCIIDQIFTGGLQSDVTCQAC 216

  Fly   343 GSKSAVRYDKFDSITLNLP----------PQRRTGL----------SLGHLLSEYITSEDL---S 384
            ...|.. .|....|:|:||          |.|.:.|          :|...|..:...|.|   :
  Rat   217 HGVSTT-IDPCWDISLDLPGSCTSFWPMSPGRESSLNGESHIPGVTTLTDCLRRFTRPEHLGSSA 280

  Fly   385 DVKCDSCNETTTHTKSVTFAKLPACLCIHVARTVWLPTGQVCKRK--DYVHFPESLSMAPY--SF 445
            .:||.||......||.:|..|||...|.|..|   .......:||  .|:.||..|.|.|:  |.
  Rat   281 KIKCGSCQSYQESTKQLTMKKLPVVACFHFKR---FEHSAKQRRKITTYISFPLELDMTPFMASS 342

  Fly   446 VQPHLNSQAGTPWGSTMSLYSSSLPMNNGVGGGEGFGTMFPKNLYRLLAVVVHSGEANSGHFVTY 510
            .:..:|.|.             .||.|:|..          :|.|.|.|||.|.|...|||:.::
  Rat   343 KETRMNGQL-------------QLPTNSGNN----------ENKYSLFAVVNHQGTLESGHYTSF 384

  Fly   511 RRGSLRNAHRWYYTSDTIVREVSIDEVLSVPAYLLFYDR 549
            .|   .:..:|:...|.::.:.||.:||....|||||.:
  Rat   385 IR---HHRDQWFKCDDAVITKASIKDVLDSEGYLLFYHK 420

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp30NP_572274.1 Peptidase_C19 39..>139 CDD:470612
Peptidase_C19F <323..548 CDD:239127 67/251 (27%)
Usp27xNP_001388057.1 Peptidase_C19D 78..419 CDD:239125 97/416 (23%)
Blue background indicates that the domain is not in the aligned region.

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