DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Usp30 and Usp22

DIOPT Version :9

Sequence 1:NP_001284912.1 Gene:Usp30 / 31519 FlyBaseID:FBgn0029819 Length:558 Species:Drosophila melanogaster
Sequence 2:NP_001004143.2 Gene:Usp22 / 216825 MGIID:2144157 Length:525 Species:Mus musculus


Alignment Length:564 Identity:118/564 - (20%)
Similarity:170/564 - (30%) Gaps:224/564 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 FVFWGPSGSRL-----RQRRGQIA--------GLHNFGLTCFLNTLLQAMAACPQ----FIAWLQ 68
            |..|.|:...|     ..:|.:|.        ||.|.|.|||:|.::||:...|.    |::...
Mouse   145 FSTWEPTKRELELLKHNPKRRKITSNCTIGLRGLINLGNTCFMNCIVQALTHTPLLRDFFLSDRH 209

  Fly    69 LYNNASPDRKSLITSMLNTLEVVNGTHATLRGDPYSPGAVLRALNALGW-----VIPQEEHDAHE 128
            .....||. ..|:..|.:..:.....|.:    |:.|..:|.    |.|     :...|:.||||
Mouse   210 RCEMQSPS-SCLVCEMSSLFQEFYSGHRS----PHIPYKLLH----LVWTHARHLAGYEQQDAHE 265

  Fly   129 LFHVLLTCLE---------EEAIRPQPLGCLSDALPTDNDDNSSLAGTATPVGGFRSFSSMAAGL 184
            .....|..|.         ::|..|....|:.|.:.|               ||.:|..:.....
Mouse   266 FLIAALDVLHRHCKGDDNGKKANNPNHCNCIIDQIFT---------------GGLQSDVTCQVCH 315

  Fly   185 GASQRIGDQPNRPSSAMLTDFLNMEYDESTSLQRLVRSEAHTPDSPASVCERDGNDRLGSVLLDA 249
            |.|..|                                                 |....:.||.
Mouse   316 GVSTTI-------------------------------------------------DPFWDISLDL 331

  Fly   250 VSPGTPFGFPLVSNPDSLATPMLGGERSSRPRLPQSQQQQDEGLNRRVSSSCRSLERLHRGPGRV 314
            ....||| :||  :|.|..:.:.|...:|               .....:.|  |.|..|     
Mouse   332 PGSSTPF-WPL--SPGSEGSVVNGESHAS---------------GTTTLTDC--LRRFTR----- 371

  Fly   315 SIWSNMMPSQVAHPFQGAMGAQIVCNGCGSKSAVRYDKFDSITLNLPPQRRTGLSLGHLLSEYIT 379
                                                           |:        ||.|.   
Mouse   372 -----------------------------------------------PE--------HLGSS--- 378

  Fly   380 SEDLSDVKCDSCNETTTHTKSVTFAKLPACLCIHVARTVWLPTGQVCKRK--DYVHFPESLSMAP 442
                :.:||..|:.....||.:|..|||...|.|:.|   .......:||  .||.||..|.|.|
Mouse   379 ----AKIKCSGCHSYQESTKQLTMKKLPIVACFHLKR---FEHSAKLRRKITTYVSFPLELDMTP 436

  Fly   443 Y--SFVQPHLNSQAGTPWGSTMSLYSSSLPMNNGVGGGEGFGTMFPKNLYRLLAVVVHSGEANSG 505
            :  |..:..:|.|...|..|          :||             .|.|.|.|||.|.|...||
Mouse   437 FMASSKESRMNGQYQQPLDS----------LNN-------------DNKYSLFAVVNHQGTLESG 478

  Fly   506 HFVTYRRGSLRNAHRWYYTSDTIVREVSIDEVLSVPAYLLFYDR 549
            |:.::.|   ::..:|:...|.|:.:.||.:||....|||||.:
Mouse   479 HYTSFIR---QHKDQWFKCDDAIITKASIKDVLDSEGYLLFYHK 519

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp30NP_001284912.1 Peptidase_C19 39..>139 CDD:271592 29/125 (23%)
UCH <304..547 CDD:278850 57/246 (23%)
Peptidase_C19F <323..548 CDD:239127 55/228 (24%)
Usp22NP_001004143.2 zf-UBP 63..123 CDD:396634
Peptidase_C19D 176..518 CDD:239125 111/530 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1867
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.