DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp30 and usp22

DIOPT Version :9

Sequence 1:NP_001284912.1 Gene:Usp30 / 31519 FlyBaseID:FBgn0029819 Length:558 Species:Drosophila melanogaster
Sequence 2:NP_001192175.2 Gene:usp22 / 100379835 XenbaseID:XB-GENE-6086060 Length:572 Species:Xenopus tropicalis


Alignment Length:563 Identity:118/563 - (20%)
Similarity:172/563 - (30%) Gaps:228/563 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 WGPSGSRL-----RQRRGQIA--------GLHNFGLTCFLNTLLQAMAACPQ----FIAWLQLYN 71
            |.|:...|     ..:|.:|.        ||.|.|.|||:|.::||:...|.    |::......
 Frog   195 WEPTKRELELLQHNPKRRKITTNCTIGLRGLINLGNTCFMNCIVQALTHTPLLRDFFLSDRHKCE 259

  Fly    72 NASPDRKSLITSMLNTL--EVVNGTHATLRGDPYSPGAVLRALNALGW-----VIPQEEHDAHEL 129
            ..||:  |.:...::||  |..:|..:     |:.|..:|.    |.|     :...|:.||||.
 Frog   260 MQSPN--SCLVCEMSTLFQEFYSGHRS-----PHIPYRLLH----LVWTHARHLAGYEQQDAHEF 313

  Fly   130 FHVLLTCLE---------EEAIRPQPLGCLSDALPTDNDDNSSLAGTATPVGGFRSFSSMAAGLG 185
            ....|..|.         ::|..|....|:.|.:.|               ||.:|..:.....|
 Frog   314 LIAALDVLHRHCKGDDNGKKANNPNHCNCIIDQIFT---------------GGLQSDVTCQVCHG 363

  Fly   186 ASQRIGDQPNRPSSAMLTDFLNMEYDESTSLQRLVRSEAHTPDSPASVCERDGNDRLGSVLLDAV 250
            .|..|                                                 |....:.||..
 Frog   364 VSTTI-------------------------------------------------DPFWDISLDLP 379

  Fly   251 SPGTPFGFPLVSNPDSLATPMLGGERSSRPRLPQSQQQQDEGLNRRVSSSCRSLERLHRGPGRVS 315
            ...||| :||....||   .::.||                   ..||.:....:.|.|      
 Frog   380 GSSTPF-WPLSPGSDS---AVVNGE-------------------SHVSGTTTLTDCLRR------ 415

  Fly   316 IWSNMMPSQVAHPFQGAMGAQIVCNGCGSKSAVRYDKFDSITLNLPPQRRTGLSLGHLLSEYITS 380
                     ...|                                               |::.|
 Frog   416 ---------FTRP-----------------------------------------------EHLGS 424

  Fly   381 EDLSDVKCDSCNETTTHTKSVTFAKLPACLCIHVARTVWLPTGQVCKRK--DYVHFPESLSMAPY 443
            .  :.:||..|:.....||.:|..|||...|.|:.|   .......:||  .||.||..|.|.|:
 Frog   425 S--AKIKCSGCHSYQESTKQLTMKKLPIVACFHLKR---FEHSAKLRRKITTYVSFPLELDMTPF 484

  Fly   444 --SFVQPHLNSQAGTPWGSTMSLYSSSLPMNNGVGGGEGFGTMFPKNLYRLLAVVVHSGEANSGH 506
              |..:..:|.|...|        |.||..:               |.|.|.|||.|.|...|||
 Frog   485 MASSKESRMNGQYQQP--------SDSLHND---------------NKYSLFAVVNHQGTLESGH 526

  Fly   507 FVTYRRGSLRNAHRWYYTSDTIVREVSIDEVLSVPAYLLFYDR 549
            :.::.|   ::..:|:...|.|:.:.||.:||....|||||.:
 Frog   527 YTSFIR---QHKDQWFKCDDAIITKASIKDVLDSEGYLLFYHK 566

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp30NP_001284912.1 Peptidase_C19 39..>139 CDD:271592 31/127 (24%)
UCH <304..547 CDD:278850 55/246 (22%)
Peptidase_C19F <323..548 CDD:239127 54/228 (24%)
usp22NP_001192175.2 zf-UBP 95..155 CDD:366940
Peptidase_C19D 223..565 CDD:239125 112/532 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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