DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GAA1 and gaa1

DIOPT Version :9

Sequence 1:NP_572273.2 Gene:GAA1 / 31517 FlyBaseID:FBgn0029818 Length:674 Species:Drosophila melanogaster
Sequence 2:NP_593498.1 Gene:gaa1 / 2543268 PomBaseID:SPAC1002.11 Length:581 Species:Schizosaccharomyces pombe


Alignment Length:550 Identity:150/550 - (27%)
Similarity:241/550 - (43%) Gaps:81/550 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 QSKLVDGLARHVRKVCYALYVAGVAWFFCLALPEFNHGTYLSENALSPGLV--YPEIRIDANRLA 74
            |.::...|.||:..:..:|.:.|::|.|.|...|.....::||:||.||.|  |.|     ||.:
pombe     8 QIRVFPFLQRHLFFLQLSLTLIGLSWIFILPRNEIIDRLHVSESALLPGQVNTYFE-----NRYS 67

  Fly    75 IQLLEELQRERK-DHL-----STTPHAWIAAKMNEFGLETHTHNYTLRYPFGGGKEYHGKNIYGI 133
            ..:...|..... .||     :.|.:..:.......||.|...||::..|   |.|::|.|....
pombe    68 KTVSSSLTAANTWSHLDASVGTNTMYDDLEQIFTAMGLPTQKQNYSINIP---GSEFNGSNFITT 129

  Fly   134 LRAPRIASTEGIVFAAPYRAASSVHTDISASVPLLLAFADFARRKNYWAKDLIFLITEQEQLGMQ 198
            |||||..:||.::...|::.....:.:  |.|.|.::...:.:..:.|:||:|.:|.:....|..
pombe   130 LRAPRGDATESLLLCVPWKDHIGQYNE--AGVALAISLLKYFQGWSLWSKDIILVIFDDPVYGPS 192

  Fly   199 AWLEAYHDGDRELDLSKAYLRPGNLPARAGSLQAALNIEVQDLE--IDHVDVRIEGLNGKLPNLD 261
            ::|.:|      .|.:..|:....|..|:||:||.|::|:...|  .|.::|..:..||:|||||
pombe   193 SFLTSY------FDQTTPYISYTPLKIRSGSIQAGLSLELVTTENNSDVLEVLYQATNGQLPNLD 251

  Fly   262 MFNLVQRIMAREG----IASGYKQAPRKKRRHSQSHFEQNFRQMLTMLASQSSGVPTGNHGLFHR 322
            :||.:.||..:..    ...||     ....:|.|.:....:.:...:.:|:....|..|.||.:
pombe   252 LFNTISRIFMQHFNYPLRLQGY-----DFHANSGSSYTSRLKSLWMGMLTQAVSNVTSAHALFPQ 311

  Fly   323 YRIDALTIAANRRATHATLKGSPGSAAVPLLKAIEGIARSLNNLLERFHQSFFFYVIVSNDRYIS 387
            ||||.||:       ...:|...........:|||...||||||||..|||||||.|:.:..:||
pombe   312 YRIDMLTL-------RMKVKDPFSFDMFRFGQAIESTFRSLNNLLEHLHQSFFFYFILDHLHFIS 369

  Fly   388 IGDYMPALVALVACAFLKAYLTWSTLPATNAELEKAAGWLREHEQEAELEENLEPDKFELPYGSV 452
            ||:|||:::.|.|...|.||..|.                 .||::.:|..         |:...
pombe   370 IGNYMPSILILAASFMLGAYRHWI-----------------NHEKKIDLWR---------PFSFW 408

  Fly   453 LIYLTATLLIGFLCNVLPLQQYFLEIPMGAAPLTTSVLSFLSLIGFVLPFVVVLPPGGLELLHVA 517
            |..:..|:...:|.:             .:..:|..:..:|.|....:.|...:.....||:...
pombe   409 LFSIFCTIAAYYLVS-------------SSTKITVFIFLYLMLTFIGIIFSTFMTSEDAELVLSY 460

  Fly   518 FLLIYGCALIVIGLLNFALGLFAAVLTVPL 547
            .|:.....:.|:..|||:|....|:|.|||
pombe   461 DLMSKSLFISVVSTLNFSLSFVVAILLVPL 490

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GAA1NP_572273.2 Gaa1 127..639 CDD:282032 116/426 (27%)
gaa1NP_593498.1 Gaa1 123..552 CDD:282032 116/426 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 141 1.000 Domainoid score I1204
eggNOG 1 0.900 - - E1_KOG3566
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H37852
Inparanoid 1 1.050 168 1.000 Inparanoid score I1206
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0005054
OrthoInspector 1 1.000 - - oto101596
orthoMCL 1 0.900 - - OOG6_104164
Panther 1 1.100 - - LDO PTHR13304
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R467
SonicParanoid 1 1.000 - - X3579
TreeFam 1 0.960 - -
1312.850

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