DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Prosbeta2R1 and Psma6

DIOPT Version :10

Sequence 1:NP_572267.1 Gene:Prosbeta2R1 / 31511 FlyBaseID:FBgn0029812 Length:307 Species:Drosophila melanogaster
Sequence 2:NP_036098.1 Gene:Psma6 / 26443 MGIID:1347006 Length:246 Species:Mus musculus


Alignment Length:235 Identity:53/235 - (22%)
Similarity:87/235 - (37%) Gaps:38/235 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 GLRSGFNFINCRRNAELLS---KGYEPPKAIKT----GTSIVGIIYKDGVILGADTRATEGPIVS 75
            |..:||:     |:..:.|   :.|:...|.|.    |.:.|.:..||..::....:      |.
Mouse     4 GSSAGFD-----RHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKK------VP 57

  Fly    76 DK--NCSKIHHL---QDHIYCCGAGTAADTEMITLTTSAELDLHRLNTERRVPVVCASMMLRRTL 135
            ||  :.|.:.||   .:.|.|...|..||:.........|....:......:||   .|:.:|..
Mouse    58 DKLLDSSTVTHLFKITESIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPV---DMLCKRIA 119

  Fly   136 FRYQGH--------IGAALVMGGVD-TTGPQLYCIYPCGSNDKIPYAAMGSGTLAAMSVLEHGWK 191
            ...|.:        :|..:::.|:| ..|||:|...|.|........|.|.....:.|.||...|
Mouse   120 DISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVK 184

  Fly   192 PDLD--LEQGKQLVREAISAGVFNDLGSGSNIDLCVITAK 229
            ...|  .||..:.....:|..:..|. ..|.|::.|:|.:
Mouse   185 KKFDWTFEQTVETAITCLSTVLSIDF-KPSEIEVGVVTVE 223

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosbeta2R1NP_572267.1 proteasome_beta_type_7 49..236 CDD:239732 44/197 (22%)
Pr_beta_C 240..274 CDD:463597
Psma6NP_036098.1 proteasome_alpha_type_6 8..220 CDD:239723 50/226 (22%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.