DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prosbeta2R1 and psma6a

DIOPT Version :10

Sequence 1:NP_572267.1 Gene:Prosbeta2R1 / 31511 FlyBaseID:FBgn0029812 Length:307 Species:Drosophila melanogaster
Sequence 2:NP_705941.2 Gene:psma6a / 171585 ZFINID:ZDB-GENE-020326-1 Length:246 Species:Danio rerio


Alignment Length:230 Identity:49/230 - (21%)
Similarity:87/230 - (37%) Gaps:28/230 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 GLRSGFNFINCRRNAELLS---KGYEPPKAIKT----GTSIVGIIYKDGVILGADTRATEGPIVS 75
            |..:||:     |:..:.|   :.|:...|.|.    |.:.|.:..||..:: ...|.....::.
Zfish     4 GSSAGFD-----RHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVV-ITQRKVPDKLLD 62

  Fly    76 DKNCSKIHHLQDHIYCCGAGTAADTEMITLTTSAELDLHRLNTERRVPVVCASMMLRRTLFRYQG 140
            ....:.:..:.::|.|..:|..||:.........|....:......:||   .|:.:|.....|.
Zfish    63 SSTVTHLFRITENIGCVMSGMTADSRSQVQRARYEAANWKYKYGYEIPV---DMLCKRIADISQV 124

  Fly   141 H--------IGAALVMGGVD-TTGPQLYCIYPCGSNDKIPYAAMGSGTLAAMSVLEHGWKPDLD- 195
            :        :|..:::.||| ..|||:|...|.|........|.|.....|.|.||...|..|| 
Zfish   125 YTQNAEMRPLGCCMIVVGVDEELGPQVYKCDPAGYYCGFKATAAGVKQTEATSFLEKKIKKKLDW 189

  Fly   196 -LEQGKQLVREAISAGVFNDLGSGSNIDLCVITAK 229
             .:|..:.....:|..:..|. ..|.:::.|:|.:
Zfish   190 TFDQTVETAISCLSTVLAIDF-KPSELEIGVVTTE 223

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosbeta2R1NP_572267.1 proteasome_beta_type_7 49..236 CDD:239732 40/192 (21%)
Pr_beta_C 240..274 CDD:463597
psma6aNP_705941.2 proteasome_alpha_type_6 8..220 CDD:239723 46/221 (21%)
Blue background indicates that the domain is not in the aligned region.

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