DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Prosbeta2R1 and psmb5

DIOPT Version :9

Sequence 1:NP_572267.1 Gene:Prosbeta2R1 / 31511 FlyBaseID:FBgn0029812 Length:307 Species:Drosophila melanogaster
Sequence 2:XP_002941560.1 Gene:psmb5 / 100379732 XenbaseID:XB-GENE-975048 Length:257 Species:Xenopus tropicalis


Alignment Length:205 Identity:55/205 - (26%)
Similarity:101/205 - (49%) Gaps:7/205 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 EPPKAIKTGTSIVGIIYKDGVILGADTRATEGPIVSDKNCSKIHHLQDHIYCCGAGTAADTEMIT 104
            ||......||:.:...::.|||:..|:|||.|..::.:...|:..:..::....||.|||.....
 Frog    45 EPGIEFLHGTTTLAFKFRHGVIVAVDSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWE 109

  Fly   105 LTTSAELDLHRLNTERRVPVVCASMMLRRTLFRYQGHIGAALVMG----GVDTTGPQLYCIYPCG 165
            ...:.:..::.|..:.|:.|..||.:|...:::|:   |..|.||    |.|..||.||.:...|
 Frog   110 RLLARQCRIYELRNKERISVAAASKLLANMVYQYK---GMGLSMGTMICGWDKRGPGLYYVDSEG 171

  Fly   166 SNDKIPYAAMGSGTLAAMSVLEHGWKPDLDLEQGKQLVREAISAGVFNDLGSGSNIDLCVITAKG 230
            :.......::|||::.|..||:.|:..::::|:.::|.|.:|....:.|..||..::|..:...|
 Frog   172 NRVSGSVFSVGSGSMYAYGVLDRGYNYEMEVEEAQELARRSIYQATYRDAYSGGVVNLYHVREDG 236

  Fly   231 AVYLRTDTIA 240
            .|.:..|.:|
 Frog   237 WVRVSQDDVA 246

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosbeta2R1NP_572267.1 20S_bact_beta 48..241 CDD:163402 53/197 (27%)
proteasome_beta_type_7 49..236 CDD:239732 50/190 (26%)
Pr_beta_C 241..274 CDD:289249 55/205 (27%)
psmb5XP_002941560.1 proteasome_beta_type_5 54..241 CDD:239730 50/189 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.