DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3108 and Gp1ba

DIOPT Version :9

Sequence 1:NP_572262.1 Gene:CG3108 / 31506 FlyBaseID:FBgn0029807 Length:1132 Species:Drosophila melanogaster
Sequence 2:NP_001103124.1 Gene:Gp1ba / 691992 RGDID:1310239 Length:717 Species:Rattus norvegicus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3108NP_572262.1 Propep_M14 730..797 CDD:280416
M14_CP_A-B_like 821..1112 CDD:199844
Gp1baNP_001103124.1 LRRNT 20..49 CDD:214470
LRR_RI <50..176 CDD:238064
LRR_8 51..105 CDD:290566
leucine-rich repeat 51..72 CDD:275380
leucine-rich repeat 73..94 CDD:275380
LRR_8 94..152 CDD:290566
leucine-rich repeat 95..117 CDD:275380
leucine-rich repeat 118..141 CDD:275380
LRR_8 141..198 CDD:290566
leucine-rich repeat 142..165 CDD:275380
LRR_4 164..204 CDD:289563
leucine-rich repeat 166..189 CDD:275380
leucine-rich repeat 190..211 CDD:275380
TPKR_C2 221..281 CDD:301599
TonB_N 404..523 CDD:292650
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.