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Protein Alignment CG3108 and Cpa2

DIOPT Version :9

Sequence 1:	NP_572262.1	Gene:	CG3108 / 31506	FlyBaseID:	FBgn0029807	Length:	1132	Species:	Drosophila melanogaster
Sequence 2:	NP_001013101.2	Gene:	Cpa2 / 296959	RGDID:	1305563	Length:	417	Species:	Rattus norvegicus

Alignment Length:	387	Identity:	131/387 - (33%)
Similarity:	212/387 - (54%)	Gaps:	31/387 - (8%)

- Green bases have known domain annotations that are detailed below.

  Fly   725 GAQVWRIVVQTDKDKRMADELQSKYDGQLWKEVKQEVDYLLKPQV-------------LAAAERH 776
            |.||..|:...::..|...:|::        |...|:|:...|.:             :.|.:..
  Rat    22 GDQVLEIIPSHEEQIRTLLQLEA--------EEHLELDFWKSPTIPGETVHVRVPFASIQAVKVF 78

  Fly   777 IRAANLSRIVLIDNLQRVIEKENPPAEKIAELQNRKGHRLTWQAYHRLEDIHGFIDYMAKTYPDI 841
            :.:..:...::|:::|.::::|.  .|.:...|..:|....::|||.||:|:..:|.:....|.:
  Rat    79 LESQGIDYSIMIEDVQVLLDQER--EEMLFNQQRERGGNFNFEAYHTLEEIYQEMDNLVAENPGL 141

  Fly   842 CSTEIIGYSVEKRPLKILKISNGNARNPGIWIDGGMHAREWISPATVTYIANQLVEGWEDLP--- 903
            .|...||.|.|.||:.:||.|.|..: |.||:|.|:|||||::.||..:.||::...:...|
  Rat   142 VSKVNIGSSFENRPMNVLKFSTGGDK-PAIWLDAGIHAREWVTQATALWTANKIASDYGTDPAIT 205

  Fly   904 EHMRSINWYIHPVANPDGYEYSHTTDRLWRK-NMRAHGRQCPGVDLNRNFGYKWGGKGTSASPCS 967
            ..:.:::.::.||.|||||.:|.||:|:||| ..:..|..|.|||.|||:...:||.|.|:||||
  Rat   206 SLLNTLDIFLLPVTNPDGYVFSQTTNRMWRKTRSKRSGSGCVGVDPNRNWDANFGGPGASSSPCS 270

  Fly   968 QTYRGSKAFSEPETFYISKFISGFPRETFQAYLSFHSYGQYILYPWGYDYQLTQDRADLDRVARQ 1032
            .:|.|.|..||.|...|..||....:  .:|:::.|||.|.:::|:||......|..:||.||::
  Rat   271 DSYHGPKPNSEVEVKSIVDFIKSHGK--VKAFITLHSYSQLLMFPYGYKCTKPDDFNELDEVAQK 333

  Fly  1033 AGTSITKSTGVKYTVGSSATTLYPAAGGSDDWAKGIAGIKYAYTIEMGDTGRYGFVLPARFI 1094
            |..::.:..|..|.||...:.:|.|:|||.|||..: ||||::..|:.|||.|||:|||:.|
  Rat   334 AAQALKRLHGTSYKVGPICSVIYQASGGSIDWAYDL-GIKYSFAFELRDTGFYGFLLPAKQI 394

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.