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Protein Alignment CG3108 and Cpa1

DIOPT Version :9

Sequence 1:	NP_572262.1	Gene:	CG3108 / 31506	FlyBaseID:	FBgn0029807	Length:	1132	Species:	Drosophila melanogaster
Sequence 2:	NP_058694.2	Gene:	Cpa1 / 24269	RGDID:	2388	Length:	419	Species:	Rattus norvegicus

Alignment Length:	383	Identity:	131/383 - (34%)
Similarity:	212/383 - (55%)	Gaps:	27/383 - (7%)

- Green bases have known domain annotations that are detailed below.

  Fly   725 GAQVWRIVVQTDKDKRMADELQSKYDGQL--WKE-------VKQEVDYLLKPQVLAAAERHIRAA 780
            |.||.||....:...:...||:.....||  |::       :...|.:.....|.|..|.|
  Rat    22 GHQVLRISAADEAQVQKVKELEDLEHLQLDFWRDAARAGIPIDVRVPFPSIQSVKAFLEYH---- 82

  Fly   781 NLSRIVLIDNLQRVIEKENPPAEKIAELQNR--KGHRLTWQAYHRLEDIHGFIDYMAKTYPDICS 843
            .:|..::|:::|.::::|.   ::::..|.|  ......:..||.|::|:.|:|.:...:|.:.|
  Rat    83 GISYEIMIEDVQLLLDEEK---QQMSAFQARALSTDSFNYATYHTLDEIYEFMDLLVAEHPQLVS 144

  Fly   844 TEIIGYSVEKRPLKILKISNGNARNPGIWIDGGMHAREWISPATVTYIANQLVEGWEDLPEH--- 905
            ...||.:.|.||:.:||.|.|....|.||||.|:|:|||::.|:..:.|.::.:.:...|..
  Rat   145 KIQIGNTFEGRPIHVLKFSTGGTNRPAIWIDTGIHSREWVTQASGVWFAKKITKDYGQDPTFTAV 209

  Fly   906 MRSINWYIHPVANPDGYEYSHTTDRLWRKNMRAH--GRQCPGVDLNRNFGYKWGGKGTSASPCSQ 968
            :.:::.::..|.||||:.|:|.|:|:|||. |:|  |..|.|||.|||:...:|..|.|::|||:
  Rat   210 LDNMDIFLEIVTNPDGFAYTHKTNRMWRKT-RSHTQGSLCVGVDPNRNWDAGFGMAGASSNPCSE 273

  Fly   969 TYRGSKAFSEPETFYISKFISGFPRETFQAYLSFHSYGQYILYPWGYDYQLTQDRADLDRVARQA 1033
            ||||....||.|...|..|::.  ....:|::|.|||.|.:|||:||..:...|:|:||::|:.|
  Rat   274 TYRGKFPNSEVEVKSIVDFVTS--HGNIKAFISIHSYSQLLLYPYGYTSEPAPDQAELDQLAKSA 336

  Fly  1034 GTSITKSTGVKYTVGSSATTLYPAAGGSDDWAKGIAGIKYAYTIEMGDTGRYGFVLPA 1091
            .|::|...|.|:..||...|:|.|:|.:.||... .||||::|.|:.|||..||:|||
  Rat   337 VTALTSLHGTKFKYGSIIDTIYQASGSTIDWTYS-QGIKYSFTFELRDTGLRGFLLPA 393

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.