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Protein Alignment CG3108 and Cpa2

DIOPT Version :9

Sequence 1:	NP_572262.1	Gene:	CG3108 / 31506	FlyBaseID:	FBgn0029807	Length:	1132	Species:	Drosophila melanogaster
Sequence 2:	NP_001019869.1	Gene:	Cpa2 / 232680	MGIID:	3617840	Length:	417	Species:	Mus musculus

Alignment Length:	388	Identity:	134/388 - (34%)
Similarity:	209/388 - (53%)	Gaps:	33/388 - (8%)

- Green bases have known domain annotations that are detailed below.

  Fly   725 GAQVWRIVVQTDKDKRMADELQSKYDGQLWKEVKQEVDYLLKPQVLAAAERHIR----------- 778
            |.||..::..        ||.|.|...||..|...|:|:...|.| .....|:|
Mouse    22 GDQVLEVIPN--------DEEQIKTLLQLEAEEHLELDFWKSPSV-PRQTVHVRVPFASIQDVKV 77

  Fly   779 ---AANLSRIVLIDNLQRVIEKENPPAEKIAELQNRKGHRLTWQAYHRLEDIHGFIDYMAKTYPD 840
               :..::..::|:::|.::::|.  .|.:...|..:|....:.|||.||:|:..:|.:....|.
Mouse    78 FLESQGITYSIMIEDVQVLLDQER--EEMLFNQQRERGTNFNFGAYHTLEEIYQEMDNLVAENPG 140

  Fly   841 ICSTEIIGYSVEKRPLKILKISNGNARNPGIWIDGGMHAREWISPATVTYIANQLVEGWEDLP-- 903
            :.|...||.|.|.||:.:||.|.|..: |.||:|.|:|||||::.||..:.||::...:...|
Mouse   141 LVSKVNIGSSFENRPMNVLKFSTGGDK-PAIWLDAGIHAREWVTQATALWTANKIASDYGTDPAI 204

  Fly   904 -EHMRSINWYIHPVANPDGYEYSHTTDRLWRK-NMRAHGRQCPGVDLNRNFGYKWGGKGTSASPC 966
             ..:.:::.::.||.|||||.:|.|::|:||| ..:..|..|.|||.|||:...:||.|.|::||
Mouse   205 TSLLNTLDVFLLPVTNPDGYVFSQTSNRMWRKTRSKRSGSFCVGVDPNRNWDANFGGPGASSNPC 269

  Fly   967 SQTYRGSKAFSEPETFYISKFISGFPRETFQAYLSFHSYGQYILYPWGYDYQLTQDRADLDRVAR 1031
            |.:|.|....||.|...|..||....:  .:|:::.|||.|.:::|:||......|..:||.||:
Mouse   270 SDSYHGPSPNSEVEVKSIVDFIKSHGK--VKAFITLHSYSQLLMFPYGYKCAKPDDFNELDEVAQ 332

  Fly  1032 QAGTSITKSTGVKYTVGSSATTLYPAAGGSDDWAKGIAGIKYAYTIEMGDTGRYGFVLPARFI 1094
            :|..|:.:..|..|.||...:.:|.|:|||.|||..: ||||::..|:.|||.|||:|||:.|
Mouse   333 RAAQSLKRLHGTSYKVGPICSVIYQASGGSIDWAYDL-GIKYSFAFELRDTGYYGFLLPAKQI 394

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.