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Protein Alignment CG3108 and Cpb2

DIOPT Version :9

Sequence 1:	NP_572262.1	Gene:	CG3108 / 31506	FlyBaseID:	FBgn0029807	Length:	1132	Species:	Drosophila melanogaster
Sequence 2:	NP_446069.1	Gene:	Cpb2 / 113936	RGDID:	71035	Length:	422	Species:	Rattus norvegicus

Alignment Length:	417	Identity:	147/417 - (35%)
Similarity:	228/417 - (54%)	Gaps:	41/417 - (9%)

- Green bases have known domain annotations that are detailed below.

  Fly   716 FNAHLRRYDGAQVWRIVVQTDKDKRMADELQSKYDGQLWK-------EVKQEVDYLLKPQVLAAA 773
            :..|...:....|...:.:|.:..::...|.:.|:..||:       |.|:||.:.:....:.:.
  Rat    15 YEKHGLAFQSGHVLSALPRTSRQVQLLQNLTTTYEVVLWQPVTAEFIEKKKEVHFFVNASDVNSV 79

  Fly   774 ERHIRAANLSRIVLIDNLQRVIEKENPPAEKIAELQNRKGHRLTWQAYHRLEDIHGFIDYMAKTY 838
            :.::.|:.:...||::|::.:|:::..     .:..:.:.....::.||.|.:|:.:|:.:.:.:
  Rat    80 KAYLNASRIPFNVLMNNVEDLIQQQTS-----NDTVSPRASSSYYEQYHSLNEIYSWIEVITEQH 139

  Fly   839 PDICSTEIIGYSVEKRPLKILKISNGNAR-NPGIWIDGGMHAREWISPATVTYIANQLVE--GWE 900
            ||:.....||.|.||.||.:||:|....| ...||||.|:|||||||||...:....:.:  |.|
  Rat   140 PDMLQKIYIGSSYEKYPLYVLKVSGKEHRVKNAIWIDCGIHAREWISPAFCLWFIGYVTQFHGKE 204

  Fly   901 D-LPEHMRSINWYIHPVANPDGYEYSHTTDRLWRKNMRAH-GRQCPGVDLNRNFGYK-WGGKGTS 962
            : ....:|.:::||.||.|.|||:|:...:|:||||...| ..:|.|.||||||..| |..||.|
  Rat   205 NTYTRLLRHVDFYIMPVMNVDGYDYTWKKNRMWRKNRSVHMNNRCVGTDLNRNFASKHWCEKGAS 269

  Fly   963 ASPCSQTYRGSKAFSEPETFYISKFISGFPRET---FQAYLSFHSYGQYILYPWGYDYQLTQDRA 1024
            :..||:||.|....||||.    |.::.|.|..   .:||:|.|||.|.||:|:.|:...::|..
  Rat   270 SFSCSETYCGLYPESEPEV----KAVADFLRRNINHIKAYISMHSYSQQILFPYSYNRSKSKDHE 330

  Fly  1025 DLDRVARQAG---TSITKSTGVKYTVGSSATTLYPAAGGSDDWAKGIAGIKYAYTIEMGDTGRYG 1086
            :|..||.:|.   .||.|:|  :||.||.:.:||.|.||||||...: ||||::|||:.||||||
  Rat   331 ELSLVASEAVRAIESINKNT--RYTHGSGSESLYLAPGGSDDWIYDL-GIKYSFTIELRDTGRYG 392

  Fly  1087 FVLPARFIQYNGKDGVTFADTVARAIA 1113
            |:||.|||:          .|.|.|:|
  Rat   393 FLLPERFIK----------PTCAEALA 409

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.