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Protein Alignment CG3108 and Cpa1

DIOPT Version :9

Sequence 1:	NP_572262.1	Gene:	CG3108 / 31506	FlyBaseID:	FBgn0029807	Length:	1132	Species:	Drosophila melanogaster
Sequence 2:	NP_079626.2	Gene:	Cpa1 / 109697	MGIID:	88478	Length:	419	Species:	Mus musculus

Alignment Length:	385	Identity:	130/385 - (33%)
Similarity:	212/385 - (55%)	Gaps:	31/385 - (8%)

- Green bases have known domain annotations that are detailed below.

  Fly   725 GAQVWRIVVQTDKDKRMADELQS----KYDGQLWKE-------VKQEVDYLLKPQVLAAAERHIR 778
            |.||.||....:...:...||:.    |.|  .|::       :...|.:.....|.|..|.|
Mouse    22 GHQVLRISATDEAQVQKVRELEELEHLKLD--FWRDPARAGLPIDVRVPFPTIQSVKAFLEYH-- 82

  Fly   779 AANLSRIVLIDNLQRVIEKENPPAEKIAELQNR--KGHRLTWQAYHRLEDIHGFIDYMAKTYPDI 841
              ::|..::|:::|.::::|.   ::::..|.|  ......:..||.|::|:.|:|.:...:|.:
Mouse    83 --DISYEIMIEDVQSLLDEEK---QQMSAFQARALSTDAFNYATYHTLDEIYEFMDLLVTEHPQL 142

  Fly   842 CSTEIIGYSVEKRPLKILKISNGNARNPGIWIDGGMHAREWISPATVTYIANQLVEGWEDLP--- 903
            .|...||.:.|.||:.:||.|.|....|.||||.|:|:|||::.|:..:.|.::.:.:...|
Mouse   143 VSKIQIGSTFEGRPINVLKFSTGGTNRPAIWIDTGIHSREWVTQASGVWFAKKITKDYGQEPTLT 207

  Fly   904 EHMRSINWYIHPVANPDGYEYSHTTDRLWRKNMRAH--GRQCPGVDLNRNFGYKWGGKGTSASPC 966
            ..:.:::.::..|.||||:.|:|.|:|:|||. |:|  |..|.|||.|||:...:|..|.|::||
Mouse   208 AILDNMDIFLEIVTNPDGFVYTHKTNRMWRKT-RSHTEGSLCVGVDPNRNWDAAFGMPGASSNPC 271

  Fly   967 SQTYRGSKAFSEPETFYISKFISGFPRETFQAYLSFHSYGQYILYPWGYDYQLTQDRADLDRVAR 1031
            |:||||....||.|...|..|::.  ....:|::|.|||.|.:|||:||..:...|:.:||::|:
Mouse   272 SETYRGKFPNSEVEVKSIVDFVTS--HGNIKAFISIHSYSQLLLYPYGYTSEPAPDKEELDQLAK 334

  Fly  1032 QAGTSITKSTGVKYTVGSSATTLYPAAGGSDDWAKGIAGIKYAYTIEMGDTGRYGFVLPA 1091
            .|.|::|...|.|:..||...|:|.|:|.:.||... .||||::|.|:.|||..||:|||
Mouse   335 SAVTALTSLHGTKFKYGSIIDTIYQASGSTIDWTYS-QGIKYSFTFELRDTGLRGFLLPA 393

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.