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Protein Alignment CG42264 and Cpa1

DIOPT Version :9

Sequence 1:	NP_572260.2	Gene:	CG42264 / 31504	FlyBaseID:	FBgn0259149	Length:	634	Species:	Drosophila melanogaster
Sequence 2:	NP_058694.2	Gene:	Cpa1 / 24269	RGDID:	2388	Length:	419	Species:	Rattus norvegicus

Alignment Length:	416	Identity:	120/416 - (28%)
Similarity:	204/416 - (49%)	Gaps:	39/416 - (9%)

- Green bases have known domain annotations that are detailed below.

  Fly   214 GSQVQRYYG---FQLWKVHETR-LEQPELRAFWRHFGSEVWNINQDG--IDILIEQRNVADARKF 272
            |.||.|...   .|:.||.|.. ||..:| .|||       :..:.|  ||:.:...::...:.|
  Rat    22 GHQVLRISAADEAQVQKVKELEDLEHLQL-DFWR-------DAARAGIPIDVRVPFPSIQSVKAF 78

  Fly   273 MDKVGYSYNIMIDDIESAIDESYVEVPAVEHPLDSVRNNSLPWMEVPGSTMNWRRYHDQADIKQF 337
            ::..|.||.|||:|::..:||...::.|.:....|.            .:.|:..||...:|.:|
  Rat    79 LEYHGISYEIMIEDVQLLLDEEKQQMSAFQARALST------------DSFNYATYHTLDEIYEF 131

  Fly   338 LQTLLETYSENVELIQIGVTRNKRPLEVIRVSNGNPDNWAVFVDAGLQARDWLSPAALTYAISKL 402
            :..|:..:.:.|..||||.|...||:.|::.|.|..:..|:::|.|:.:|:|::.|:..:...|:
  Rat   132 MDLLVAEHPQLVSKIQIGNTFEGRPIHVLKFSTGGTNRPAIWIDTGIHSREWVTQASGVWFAKKI 196

  Fly   403 THLWGRPKGKDKGEGQRQSRAEKAMRRIDWYFLPLANPDGYQYSRQTDRLWTKNRGYDSVSGCYG 467
            |        ||.|:   .......:..:|.:...:.||||:.|:.:|:|:|.|.|.:...|.|.|
  Rat   197 T--------KDYGQ---DPTFTAVLDNMDIFLEIVTNPDGFAYTHKTNRMWRKTRSHTQGSLCVG 250

  Fly   468 VNLDRNFDYGWDGTGSTSNPCKNLYRGAHSFSEPESRAVCSFLSGMREYLGAYVSLGGYGQAITY 532
            |:.:||:|.|:...|::||||...|||....||.|.:::..|::. ...:.|::|:..|.|.:.|
  Rat   251 VDPNRNWDAGFGMAGASSNPCSETYRGKFPNSEVEVKSIVDFVTS-HGNIKAFISIHSYSQLLLY 314

  Fly   533 PWGDADYVTENQRNLKQTARRAVLALRRLNQAEYSSGTSYRQKLARPGNSADWVQDRIGPQLVFN 597
            |:|.......:|..|.|.|:.||.||..|:..::..|:.........|::.||...: |.:..|.
  Rat   315 PYGYTSEPAPDQAELDQLAKSAVTALTSLHGTKFKYGSIIDTIYQASGSTIDWTYSQ-GIKYSFT 378

  Fly   598 MFLKDQGRYGYLLPPHYIVESGEEVF 623
            ..|:|.|..|:|||...|:.:.||.:
  Rat   379 FELRDTGLRGFLLPASQIIPTAEETW 404

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.