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Protein Alignment CG42264 and Cpb2

DIOPT Version :9

Sequence 1:	NP_572260.2	Gene:	CG42264 / 31504	FlyBaseID:	FBgn0259149	Length:	634	Species:	Drosophila melanogaster
Sequence 2:	NP_446069.1	Gene:	Cpb2 / 113936	RGDID:	71035	Length:	422	Species:	Rattus norvegicus

Alignment Length:	432	Identity:	114/432 - (26%)
Similarity:	203/432 - (46%)	Gaps:	44/432 - (10%)

- Green bases have known domain annotations that are detailed below.

  Fly   203 SSYQINRRYRNGSQVQRYYGFQLWKVHETRLEQPELRAFWRHFGSEVWNINQDGIDILIEQRNVA 267
            |.:.::...|...|||...  .|...:|..|.||....|..         .:..:...:...:|.
  Rat    24 SGHVLSALPRTSRQVQLLQ--NLTTTYEVVLWQPVTAEFIE---------KKKEVHFFVNASDVN 77

  Fly   268 DARKFMDKVGYSYNIMIDDIESAIDESYVEVPAVEHPLDSVRNNSLPWMEVPGSTMNWRRYHDQA 332
            ..:.:::.....:|::::::|..|.:        :...|:|...:        |:..:.:||...
  Rat    78 SVKAYLNASRIPFNVLMNNVEDLIQQ--------QTSNDTVSPRA--------SSSYYEQYHSLN 126

  Fly   333 DIKQFLQTLLETYSENVELIQIGVTRNKRPLEVIRVSNGNPDNW--AVFVDAGLQARDWLSPAAL 395
            :|..:::.:.|.:.:.::.|.||.:..|.||.|::|| |.....  |:::|.|:.||:|:|||..
  Rat   127 EIYSWIEVITEQHPDMLQKIYIGSSYEKYPLYVLKVS-GKEHRVKNAIWIDCGIHAREWISPAFC 190

  Fly   396 TYAISKLTHLWGRPKGKDKGEGQRQSRAEKAMRRIDWYFLPLANPDGYQYSRQTDRLWTKNRGYD 460
            .:.|..:|...|           :::...:.:|.:|:|.:|:.|.|||.|:.:.:|:|.|||...
  Rat   191 LWFIGYVTQFHG-----------KENTYTRLLRHVDFYIMPVMNVDGYDYTWKKNRMWRKNRSVH 244

  Fly   461 SVSGCYGVNLDRNF-DYGWDGTGSTSNPCKNLYRGAHSFSEPESRAVCSFLSGMREYLGAYVSLG 524
            ..:.|.|.:|:||| ...|...|::|..|...|.|.:..||||.:||..||.....::.||:|:.
  Rat   245 MNNRCVGTDLNRNFASKHWCEKGASSFSCSETYCGLYPESEPEVKAVADFLRRNINHIKAYISMH 309

  Fly   525 GYGQAITYPWGDADYVTENQRNLKQTARRAVLALRRLNQ-AEYSSGTSYRQKLARPGNSADWVQD 588
            .|.|.|.:|:......:::...|...|..||.|:..:|: ..|:.|:........||.|.||:.|
  Rat   310 SYSQQILFPYSYNRSKSKDHEELSLVASEAVRAIESINKNTRYTHGSGSESLYLAPGGSDDWIYD 374

  Fly   589 RIGPQLVFNMFLKDQGRYGYLLPPHYIVESGEEVFEFLRIIA 630
             :|.:..|.:.|:|.||||:|||..:|..:..|....:..||
  Rat   375 -LGIKYSFTIELRDTGRYGFLLPERFIKPTCAEALAAVSKIA 415

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.