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Protein Alignment CG3097 and Cpb2

DIOPT Version :9

Sequence 1:	NP_572259.1	Gene:	CG3097 / 31503	FlyBaseID:	FBgn0029804	Length:	445	Species:	Drosophila melanogaster
Sequence 2:	NP_446069.1	Gene:	Cpb2 / 113936	RGDID:	71035	Length:	422	Species:	Rattus norvegicus

Alignment Length:	433	Identity:	161/433 - (37%)
Similarity:	230/433 - (53%)	Gaps:	52/433 - (12%)

- Green bases have known domain annotations that are detailed below.

  Fly    12 LLVAAVAASLANELPSNLTLLDANEIPQRYDEAQLWRIYNISEAMQKRVPV-GQMLEQKFGGNIW 75
            :|.|....|...:|..|||        ..| |..||:            || .:.:|:|
  Rat    27 VLSALPRTSRQVQLLQNLT--------TTY-EVVLWQ------------PVTAEFIEKK------ 64

  Fly    76 KENSKFLDISIARDQLKAARSFLSAHRLDPQILSHNIQSMIDEELLEGIQSSSFGHGRRTKKAAR 140
            ||...|::.|    .:.:.:::|:|.|:...:|.:|::.:|.:      |:|:     .|.....
  Rat    65 KEVHFFVNAS----DVNSVKAYLNASRIPFNVLMNNVEDLIQQ------QTSN-----DTVSPRA 114

  Fly   141 SSMHWKDYHDLETIYSFMREIRTKFPNIVRLYTIGQTAEGRDLKVLRIS-ENPRENKKVWIDGGI 204
            ||.:::.||.|..|||::..|..:.|::::...||.:.|...|.||::| :..|....:|||.||
  Rat   115 SSSYYEQYHSLNEIYSWIEVITEQHPDMLQKIYIGSSYEKYPLYVLKVSGKEHRVKNAIWIDCGI 179

  Fly   205 HAREWISPA-TVTFILY--QLMSDWENQPAHIRGLTWYIMPVMNPDGYEYSRTTNRLWRKNRSPS 266
            ||||||||| .:.||.|  |...........:|.:.:|||||||.|||:|:...||:||||||..
  Rat   180 HAREWISPAFCLWFIGYVTQFHGKENTYTRLLRHVDFYIMPVMNVDGYDYTWKKNRMWRKNRSVH 244

  Fly   267 RRAQCSGVDLNRNF-DIGWNGYGSSTNPCSDTYRGSAPASERETRAVAEFLAKRKYNLESYLTFH 330
            ...:|.|.|||||| ...|...|:|:..||:||.|..|.||.|.:|||:||.:...::::|::.|
  Rat   245 MNNRCVGTDLNRNFASKHWCEKGASSFSCSETYCGLYPESEPEVKAVADFLRRNINHIKAYISMH 309

  Fly   331 SYGQMIVYPWAYKAVKVKDASVLQRVSSLAAERI--LQKTGTSYRAAVTHEVLGIAGGGSDDWSR 393
            ||.|.|::|::|...|.||...|..|:|.|...|  :.| .|.|......|.|.:|.||||||.
  Rat   310 SYSQQILFPYSYNRSKSKDHEELSLVASEAVRAIESINK-NTRYTHGSGSESLYLAPGGSDDWI- 372

  Fly   394 AALGVKYVYTIELRDRGAYGFVLPPRFIKDTALEGWTVVETVA 436
            ..||:||.:||||||.|.|||:||.||||.|..|....|..:|
  Rat   373 YDLGIKYSFTIELRDTGRYGFLLPERFIKPTCAEALAAVSKIA 415

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.