DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lin-52 and wuc

DIOPT Version :9

Sequence 1:NP_001284908.1 Gene:lin-52 / 31499 FlyBaseID:FBgn0029800 Length:157 Species:Drosophila melanogaster
Sequence 2:NP_001097291.1 Gene:wuc / 36401 FlyBaseID:FBgn0033770 Length:136 Species:Drosophila melanogaster


Alignment Length:143 Identity:41/143 - (28%)
Similarity:57/143 - (39%) Gaps:35/143 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 KDVPEVKERPITPEDELISMETLRPSPVQWP----ERFPGMDEFLSMSDTPMYTRSTNYTSNLTD 99
            |.|.:..:|..:|.||   ..||...|:::.    ||.....|....|.     |......::.|
  Fly     2 KKVTKSIKREGSPSDE---EYTLEEDPIEFELEKMERGSSNGESEEESQ-----RDQKQADSIID 58

  Fly   100 D---------------------DMVKINELAQLPPEDLIDKIKSMHDEIYQLGLREAMEMTRGKL 143
            |                     |:.|:.||:.|||..:..:|:.|..|||:|...||.|:.|.|.
  Fly    59 DMVEQNDQEQEAAGEQDVERENDLRKMYELSLLPPAAIAAQIQQMEKEIYELSQWEARELIRSKH 123

  Fly   144 LGIFD--RDRAPK 154
            |.||.  |.||.|
  Fly   124 LRIFGNCRRRANK 136

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lin-52NP_001284908.1 LIN52 55..147 CDD:287062 29/116 (25%)
wucNP_001097291.1 LIN52 <57..127 CDD:287062 21/69 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR31489
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

Return to query results.
Submit another query.