DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4078 and RAD3

DIOPT Version :9

Sequence 1:NP_001259262.1 Gene:CG4078 / 31497 FlyBaseID:FBgn0029798 Length:985 Species:Drosophila melanogaster
Sequence 2:NP_011098.3 Gene:RAD3 / 856918 SGDID:S000000973 Length:778 Species:Saccharomyces cerevisiae


Alignment Length:800 Identity:212/800 - (26%)
Similarity:343/800 - (42%) Gaps:176/800 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 IAGIPVHFPF-EPYPVQRAYMEKVIHCLRDGTNGVLESPTGTGKTLSLLCSSLAWIRTRQSEHQK 69
            |..:||.||: :.||.|..||..:...|..|.|.:||.|:|||||:|||..::|: :....||: 
Yeast     5 IDDLPVLFPYPKIYPEQYNYMCDIKKTLDVGGNSILEMPSGTGKTVSLLSLTIAY-QMHYPEHR- 67

  Fly    70 QMVKMEKADFSGLGGGAPGGDLSELAKTMGRANNWGVPKVIYASRTHSQLTQAMREL-------- 126
                                                  |:||.|||.|::.:|:.||        
Yeast    68 --------------------------------------KIIYCSRTMSEIEKALVELENLMDYRT 94

  Fly   127 KRTAY-ANMRSVVLGSRDQLCIHPEVMREQGNSNKTNMCKLRVHSKTC-----SFQMRVESRKDH 185
            |...| .:.|.:.|.||..||:||||.:|:..:.....|:...:.:..     ..:..||..:.|
Yeast    95 KELGYQEDFRGLGLTSRKNLCLHPEVSKERKGTVVDEKCRRMTNGQAKRKLEEDPEANVELCEYH 159

  Fly   186 PDLRGPTIMD--------IEDLVKVGQRLKICPYFASRELVPQADITFMPYNYLLDPK--ARKAN 240
            .:|....:.|        .|.|:|..:...:||||..|.::...:|....|:||||||  .|.:|
Yeast   160 ENLYNIEVEDYLPKGVFSFEKLLKYCEEKTLCPYFIVRRMISLCNIIIYSYHYLLDPKIAERVSN 224

  Fly   241 KIELGNTIVILDEAHNIEKICEESASVQIKSSDVAMAI-------EDVTHIMQVFASGESQDMAG 298
            ::. .::|||.||||||:.:|.||.|:.:.:..:..|.       |.::.:.:|    :||    
Yeast   225 EVS-KDSIVIFDEAHNIDNVCIESLSLDLTTDALRRATRGANALDERISEVRKV----DSQ---- 280

  Fly   299 DEPKDFTLDDLTLLKEMLLELEKAIDA-----IVVDNA---VDGTTFPASMMYELLGKANFTYGN 355
                  .|.|         |.||.:..     |:.|..   |:....|..::.|.:.      ||
Yeast   281 ------KLQD---------EYEKLVQGLHSADILTDQEEPFVETPVLPQDLLTEAIP------GN 324

  Fly   356 VAT---IVSLLDKLVQYLLVASQQMSIRKGGTFTLLSDLLTIVFANKEDVMSKVYASFKVHVLVE 417
            :..   .||.|.:|::||....:.:.:......:.|..|..:.|..::.:.   :.|.::.:||.
Yeast   325 IRRAEHFVSFLKRLIEYLKTRMKVLHVISETPKSFLQHLKQLTFIERKPLR---FCSERLSLLVR 386

  Fly   418 ESKQGHGKQQGAKQQGGWLGKGTIAAATGLSKVA-----------------------------KI 453
            .                 |....:...|.|..:|                             .|
Yeast   387 T-----------------LEVTEVEDFTALKDIATFATLISTYEEGFLLIIEPYEIENAAVPNPI 434

  Fly   454 INFWCFNPGFGMEQLLNTQVRSVILTSGTLAPLKPLIAELAIPVAQHLENPHIVDQSQVYVKIIG 518
            :.|.|.:....::.:.. :..|||:||||::||......|.............:.:......||.
Yeast   435 MRFTCLDASIAIKPVFE-RFSSVIITSGTISPLDMYPRMLNFKTVLQKSYAMTLAKKSFLPMIIT 498

  Fly   519 TGPDRQQLISNYANRDNPKYISSLGQTILNVARIVPDGLLVFFPSYPMLNKCVDAWQASGLWADI 583
            .|.|:..:.|.:..|::|..:.:.|..::..|:|.|||::||||||..:...|..||..|:..::
Yeast   499 KGSDQVAISSRFEIRNDPSIVRNYGSMLVEFAKITPDGMVVFFPSYLYMESIVSMWQTMGILDEV 563

  Fly   584 SCKKPIFLEPRSKDQFTSTMEEFYQAIRDSKGAVFMAVCRGKVSEGLDFADRNGRAVIITGLPFP 648
            ...|.|.:|.....:.:..:|.:.:|..:.:||:.::|.|||||||:||..:.||.|::.|:||.
Yeast   564 WKHKLILVETPDAQETSLALETYRKACSNGRGAILLSVARGKVSEGIDFDHQYGRTVLMIGIPFQ 628

  Fly   649 PLKDPKVILKRR--YLEAN-RTRENQLLSGQEWYNLDATRAVNQAIGRVIRHRNDYGAILLCDSR 710
            ..:..  |||.|  ::..| |.|||..||      .||.|...|.:|||:|.::|||.::|.|.|
Yeast   629 YTESR--ILKARLEFMRENYRIRENDFLS------FDAMRHAAQCLGRVLRGKDDYGVMVLADRR 685

  Fly   711 FKDASQVQQLSKWIRGHLGD 730
            |  :.:..||.|||...|.|
Yeast   686 F--SRKRSQLPKWIAQGLSD 703

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4078NP_001259262.1 rad3 10..742 CDD:273169 210/795 (26%)
DEAD_2 111..274 CDD:284209 58/186 (31%)
Helicase_C_2 546..725 CDD:290046 68/181 (38%)
HN_RTEL1 896..985 CDD:259826
RAD3NP_011098.3 rad3 7..717 CDD:273169 210/797 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1199
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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