DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4078 and brip1

DIOPT Version :9

Sequence 1:NP_001259262.1 Gene:CG4078 / 31497 FlyBaseID:FBgn0029798 Length:985 Species:Drosophila melanogaster
Sequence 2:NP_001103766.2 Gene:brip1 / 794038 ZFINID:ZDB-GENE-081107-11 Length:1216 Species:Danio rerio


Alignment Length:1201 Identity:318/1201 - (26%)
Similarity:492/1201 - (40%) Gaps:342/1201 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 ESLIAGIPVHFPFEPYPVQRAYMEKVIHCLRDGTNGVLESPTGTGKTLSLLCSSLAW-------- 59
            |..|.|:.::||.:.||.|.|.|..:|..|.:|.:.:||||||:||:|:||||:|||        
Zfish     7 EYTIGGVKINFPCKAYPSQLAMMNSIIRGLNNGQHCLLESPTGSGKSLALLCSALAWQQAQFVKE 71

  Fly    60 -------------------------------IRTRQS---------------------------E 66
                                           ..||.|                           :
Zfish    72 QDAGTGFADCKKSEVVTPCQCACHSRNAQSTFNTRASRPPTVHLTCEGTSAQPTTPLSKGGKSDQ 136

  Fly    67 HQKQMV------KMEKA--------DFSG------------------------------------ 81
            |:|..:      |::.:        ||..                                    
Zfish   137 HKKPSLSSRLSEKLQASLNNGEHDDDFKNDRKRIRTPGTEQKISKRRCLEKGVIYIDDDDEEEES 201

  Fly    82 --------------LGGGA--------------------------PGGDLSELAKTMGRANNWG- 105
                          |..||                          .|..::|::|...:..:.. 
Zfish   202 LERPVPGAQTWTMELNNGARADSCQSQPQCCSPVSCSLCPCANLKAGQKMAEMSKDNEKDKDGSG 266

  Fly   106 ---VPKVIYASRTHSQLTQAMRELKRTAYANMRSVVLGSRDQLCIHPEVMREQGNSNKTNMCKLR 167
               :||:.:.:|||.|:||..||||||.|:.:...:|.|||..|:||||:   .::|:...||..
Zfish   267 KKKIPKIFFGTRTHKQITQIARELKRTLYSTVPMTILSSRDHTCVHPEVV---PHANRNERCKEF 328

  Fly   168 VHSK---TCSFQMRVESRKDHPDLRG----PTIMDIEDLVKVGQRLKICPYFASRELVPQADITF 225
            :.:|   :|.:...|...:|...|:.    ....|||:||::|.:|:.|.|:|:|||:.:|.|.|
Zfish   329 LEAKNGRSCRYYHNVHKMRDQSTLQWVHGLHQAWDIEELVRLGGKLRSCAYYAARELMQEACIVF 393

  Fly   226 MPYNYLLDPKARKANKIELGNTIVILDEAHNIEKICEESASVQIKSSDVAMAIED----VTHIMQ 286
            .||||||||..|::.:|.|...||:||||||||....||||..:..:.:.:|.::    |||.::
Zfish   394 CPYNYLLDPLIRESMEINLKEQIVVLDEAHNIEDCARESASFTLNQAQLLLARDEIDGMVTHNIR 458

  Fly   287 ------------VFASGESQDMAGDEPKDFTLDDLTLLKEMLLELEKAIDAIVVDN--AVDGTTF 337
                        ...:...:...|.|.:::         |...::...::.:.:..  .:...||
Zfish   459 RDQHRPLLAFCCSLTNWVQESCGGLEEREY---------ESSCKVWTGVEVLGIFRGLGITADTF 514

  Fly   338 PASMMYELLGKANFTYGNVATIVSLLDKLVQYLLVASQQMSIR----KGGTFTLLSDLLTIV--- 395
            |      ||.|      |:|.:   |:|..:..||..::.:::    ...|.::|..|..::   
Zfish   515 P------LLQK------NLAAV---LEKEERVGLVNGREETVQVPTISSNTQSMLKSLFMVLEFL 564

  Fly   396 ------FANKEDVMSKVYASFKVHVLVEESKQGHGKQQGAKQQGGWLGKGTIAAATGLSKVAKII 454
                  ||:            ...|.:::|.....:|.....||.:........:.....:...:
Zfish   565 FRQNCRFAD------------DYRVALQQSYMWTTQQDLPDAQGFFARPHRRRQSNRTKTLVHTL 617

  Fly   455 NFWCFNPGFGMEQLLNTQVRSVILTSGTLAPLKPLIAELAIPVAQHLENPHIVDQSQVYVKIIGT 519
            :|||.||......|.:| |||::||||||:|:....:||.|..:..||..|::::|||:|..||.
Zfish   618 SFWCLNPAVAFSDLSST-VRSIVLTSGTLSPMGSFSSELGIKFSIQLEANHVINKSQVWVGTIGA 681

  Fly   520 GPDRQQLISNYANRDNPKYISSLGQTILNVARIVPDGLLVFFPSYPMLNKCVDAWQASGLWADIS 584
            ||..::|.:.:.:.:...:...:|..:|.|...|..|:|.|.|||.||:|..|.|..:|||..:.
Zfish   682 GPQGRKLCATFQHAETFAFQDEVGALLLKVCHTVSRGVLCFLPSYKMLDKLRDRWTNTGLWDKLE 746

  Fly   585 CKKPIFLEPR--SKDQFTSTMEEFYQAIRDS-------KGAVFMAVCRGKVSEGLDFADRNGRAV 640
            ..|.:..|||  .|..|...::.:|:|||.:       .||:.:|||||||||||||.|.|.|||
Zfish   747 ECKTVITEPRGGGKGDFDELLQTYYEAIRGTAAKGEKRDGALLVAVCRGKVSEGLDFTDDNARAV 811

  Fly   641 IITGLPFPPLKDPKVILKRRYLEANRTRENQLLSGQEWYNLDATRAVNQAIGRVIRHRNDYGAIL 705
            :..|:|||.:||.:|.||.:|.: ...:...||.|..||.:.|.||:|||:||.||||||:||::
Zfish   812 VTIGIPFPNIKDLQVELKMKYND-KHAKSRGLLPGGRWYEIQAYRALNQALGRCIRHRNDWGALI 875

  Fly   706 LCDSRFK--DASQVQQLSKWIR----------GHL--------GDR--------------PQC-- 734
            |.|.||:  ....:..||||:|          |.:        |.|              |||  
Zfish   876 LVDDRFRTNPNKYITGLSKWVRQLVRHHDTFTGAMQSLKSFSQGQRGAVETFEEPQSQAAPQCPS 940

  Fly   735 -----SPFGPIVRELRQFFKNAE---ANMKLPDERETDSPLETVCKTEDEP-LAAIPKVKREPGS 790
                 ||  |:  |:....|.|:   ..:.|..|.:||:......||.|:. :...||..||...
Zfish   941 PSTVSSP--PL--EIITPCKPADPQPLQLNLHIEVQTDNSESRASKTGDQKNIQHPPKPSREHNV 1001

  Fly   791 NATFKSANESAIKVEMANSIKTWTPADYASAAG----------------HKLGG-AAPNAMDFMS 838
            ..|..|.|.......:::..||.......:|..                |::.| ...|...|..
Zfish  1002 QRTPLSTNHLFTSTPVSSQFKTPIFQSEQNATSLNKQQAQKEVIPVTPKHQINGDPDQNETSFEP 1066

  Fly   839 RLD---------SNVSSIDFNCCTDSKSGSSGLVKIHKRERSSPTAPESSSQVTKKRYKLVENIK 894
            :|:         .|.|..|..   |:|.....:.       .||...|...:..:      |:|:
Zfish  1067 QLEQIFVIPNLKQNTSVTDLE---DTKEDEQSIF-------YSPELFEGGEEEKE------EDIE 1115

  Fly   895 VEPSSSQAKEAPEERAAFLRELRSLVTQDQF 925
            ||..||...|.....|   ....|::.:|.|
Zfish  1116 VEEKSSLQAEVKNPAA---NSTASVLLEDLF 1143

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4078NP_001259262.1 rad3 10..742 CDD:273169 271/979 (28%)
DEAD_2 111..274 CDD:284209 71/169 (42%)
Helicase_C_2 546..725 CDD:290046 86/189 (46%)
HN_RTEL1 896..985 CDD:259826 8/30 (27%)
brip1NP_001103766.2 PolC <23..>73 CDD:331024 23/49 (47%)
HBB 272..913 CDD:331768 222/681 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53562
OrthoDB 1 1.010 - - D141017at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3587
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
65.960

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