DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4078 and Xpd

DIOPT Version :9

Sequence 1:NP_001259262.1 Gene:CG4078 / 31497 FlyBaseID:FBgn0029798 Length:985 Species:Drosophila melanogaster
Sequence 2:NP_726036.2 Gene:Xpd / 37414 FlyBaseID:FBgn0261850 Length:769 Species:Drosophila melanogaster


Alignment Length:802 Identity:209/802 - (26%)
Similarity:344/802 - (42%) Gaps:180/802 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 IAGIPVHFPFE-PYPVQRAYMEKVI-------HCLRDGTNGVLESPTGTGKTLSLLCSSLAWIRT 62
            :.|:.|:||:| .||.|.|||.::.       |||       ||.|:|||||.:||...:|::  
  Fly     5 VDGLLVYFPYEYIYPEQYAYMLELKRSLDAKGHCL-------LEMPSGTGKTATLLSLIVAYM-- 60

  Fly    63 RQSEHQKQMVKMEKADFSGLGGGAPGGDLSELAKTMGRANNWGVPKVIYASRTHSQLTQAMRELK 127
              .||.:.                                   |.|:||.|||..::.:.:.||:
  Fly    61 --VEHPET-----------------------------------VRKLIYCSRTVPEIEKVIAELQ 88

  Fly   128 RTAYANMR---------SVVLGSRDQLCIHPEVMREQGNSNKTNMCKLRVHSKTCSF-QMRVESR 182
            .......|         .:||.||..:||||||.:|:........|    :..|.|: :.|.|..
  Fly    89 NLMVYYERHCPNPPPFTGLVLSSRKNMCIHPEVSKEREGKAVDGKC----YGLTASYIRERHEMD 149

  Fly   183 KDHP--------DLRGPT------IMDIEDLVKVGQRLKICPYFASRELVPQADITFMPYNYLLD 233
            .:.|        .|.|..      :..|:||.:.|:....||||.:|..:..|.|....|:||||
  Fly   150 TETPICQYFEGFSLEGKESTLPVGVYSIDDLKEYGRSRNWCPYFLARYAIAHAHIVVYSYHYLLD 214

  Fly   234 PK-ARKANKIELGNTIVILDEAHNIEKICEESASVQIKSSDVAMAIEDVTHIMQVFASGESQDMA 297
            || |:..:|.....:.|:.||||||:.:|.:|.||:|....|..:...:.|:.::.         
  Fly   215 PKIAQVVSKEMSRESCVVFDEAHNIDNVCIDSMSVKINRRTVERSTNALNHLTKLV--------- 270

  Fly   298 GDEPKDFTLDDLTLLKEMLLELEKAI-DAIV---VDNAVDGTTFPASMMYELLGKANFTYGNVAT 358
                :|...:|...|.|....:.:.: ||.|   .|..:.....|..::.|::.      ||:..
  Fly   271 ----QDIREEDTNRLNEEYQRMVQGLKDASVQRDTDMILANPVLPNDVLTEVVP------GNIRN 325

  Fly   359 ---IVSLLDKLVQYLLVASQQMSIRKGGTFTLLSDLLTIVFANKEDV------MSKVYASFKVHV 414
               .:|.|.:.::|:....:...:.:......|.|:.:.:...::.:      :|.:..:.::..
  Fly   326 ADHFLSFLRRFIEYIKTRLRVHHVVQESPAGFLKDISSKICIERKPLRFCAERLSSLLRTLEISD 390

  Fly   415 LVEESKQGHGKQQGAKQQGGWLGKGTIAA--ATGLSKVAK-------------------IINFWC 458
            |.|                  .|..|:..  ||.:|...|                   |::|.|
  Fly   391 LTE------------------YGALTLITHFATLVSTYTKGFTIIIEPFDDKTPTVSNPILHFSC 437

  Fly   459 FNPGFGMEQLLNTQVRSVILTSGTLAPLK--PLIAELAIPVAQH-----LENPHIVDQSQVYVKI 516
            .:....|..:. ::.::|::|||||:|:.  |.|.:.. ||...     |..|.::..      |
  Fly   438 LDSSIAMAPVF-SRFQTVVITSGTLSPMDMYPKILDFD-PVVMSSFTMTLARPCLLPM------I 494

  Fly   517 IGTGPDRQQLISNYANRDNPKYISSLGQTILNVARIVPDGLLVFFPSYPMLNKCVDAWQASGLWA 581
            :..|.|:..:.|.:..|::...|.:.||.::.||:.||||::.||.||..|...|.:|...|:..
  Fly   495 VSKGNDQVTISSKFETREDTAVIRNYGQLLVEVAKTVPDGIVCFFTSYLYLESVVASWYDQGIVD 559

  Fly   582 DISCKKPIFLEPRSKDQFTSTMEEFYQAIRDSKGAVFMAVCRGKVSEGLDFADRNGRAVIITGLP 646
            .:...|.:|:|.:...:.:..:..:.:|....:|||.:||.|||||||:||....||||::.|:|
  Fly   560 TLLRYKLLFIETQDNAETSYALMNYVKACDCGRGAVLLAVARGKVSEGVDFDHHYGRAVLMFGIP 624

  Fly   647 FPPLKDPKVILKRR--YL-EANRTRENQLLSGQEWYNLDATRAVNQAIGRVIRHRNDYGAILLCD 708
            :  :.....|||.|  || :..:.|||..|:      .||.|...|.:||.:|.:.|||.::..|
  Fly   625 Y--VYTQSRILKARLDYLRDQFQIRENDFLT------FDAMRHAAQCVGRALRGKTDYGIMIFAD 681

  Fly   709 SRFKDASQVQQLSKWIRGHLGD 730
            .||....:..:|.|||:.||.|
  Fly   682 KRFSRHDKRSRLPKWIQEHLVD 703

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4078NP_001259262.1 rad3 10..742 CDD:273169 208/798 (26%)
DEAD_2 111..274 CDD:284209 58/187 (31%)
Helicase_C_2 546..725 CDD:290046 64/181 (35%)
HN_RTEL1 896..985 CDD:259826
XpdNP_726036.2 rad3 7..717 CDD:273169 209/800 (26%)
DEXDc2 8..280 CDD:214693 91/334 (27%)
HBB 270..413 CDD:284245 25/179 (14%)
HELICc2 542..686 CDD:214694 52/151 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467043
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1199
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 67 1.000 Inparanoid score I412
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D141017at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11472
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
65.900

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