Protein Alignment Rtel1 and Xpd

DIOPT Version :10

• Sequence 1: NP_572254.1
• Gene: Rtel1 / 31497
• FlyBaseID: FBgn0029798
• Length: 985
• Species: Drosophila melanogaster
• Sequence 2: NP_726036.2
• Gene: Xpd / 37414
• FlyBaseID: FBgn0261850
• Length: 769
• Species: Drosophila melanogaster
• Alignment Length: 802
• Identity: 209/802 - (26%)
• Similarity: 344/802 - (42%)
• Gaps: 180/802 - (22%)

  Fly     6 IAGIPVHFPFE-PYPVQRAYMEKVI-------HCLRDGTNGVLESPTGTGKTLSLLCSSLAWIRT 62
            :.|:.|:||:| .||.|.|||.::.       |||       ||.|:|||||.:||...:|::
  Fly     5 VDGLLVYFPYEYIYPEQYAYMLELKRSLDAKGHCL-------LEMPSGTGKTATLLSLIVAYM-- 60

  Fly    63 RQSEHQKQMVKMEKADFSGLGGGAPGGDLSELAKTMGRANNWGVPKVIYASRTHSQLTQAMRELK 127
              .||.:.                                   |.|:||.|||..::.:.:.||:
  Fly    61 --VEHPET-----------------------------------VRKLIYCSRTVPEIEKVIAELQ 88

  Fly   128 RTAYANMR---------SVVLGSRDQLCIHPEVMREQGNSNKTNMCKLRVHSKTCSF-QMRVESR 182
            .......|         .:||.||..:||||||.:|:........|    :..|.|: :.|.|..
  Fly    89 NLMVYYERHCPNPPPFTGLVLSSRKNMCIHPEVSKEREGKAVDGKC----YGLTASYIRERHEMD 149

  Fly   183 KDHP--------DLRGPT------IMDIEDLVKVGQRLKICPYFASRELVPQADITFMPYNYLLD 233
            .:.|        .|.|..      :..|:||.:.|:....||||.:|..:..|.|....|:||||
  Fly   150 TETPICQYFEGFSLEGKESTLPVGVYSIDDLKEYGRSRNWCPYFLARYAIAHAHIVVYSYHYLLD 214

  Fly   234 PK-ARKANKIELGNTIVILDEAHNIEKICEESASVQIKSSDVAMAIEDVTHIMQVFASGESQDMA 297
            || |:..:|.....:.|:.||||||:.:|.:|.||:|....|..:...:.|:.::.
  Fly   215 PKIAQVVSKEMSRESCVVFDEAHNIDNVCIDSMSVKINRRTVERSTNALNHLTKLV--------- 270

  Fly   298 GDEPKDFTLDDLTLLKEMLLELEKAI-DAIV---VDNAVDGTTFPASMMYELLGKANFTYGNVAT 358
                :|...:|...|.|....:.:.: ||.|   .|..:.....|..::.|::.      ||:..
  Fly   271 ----QDIREEDTNRLNEEYQRMVQGLKDASVQRDTDMILANPVLPNDVLTEVVP------GNIRN 325

  Fly   359 ---IVSLLDKLVQYLLVASQQMSIRKGGTFTLLSDLLTIVFANKEDV------MSKVYASFKVHV 414
               .:|.|.:.::|:....:...:.:......|.|:.:.:...::.:      :|.:..:.::..
  Fly   326 ADHFLSFLRRFIEYIKTRLRVHHVVQESPAGFLKDISSKICIERKPLRFCAERLSSLLRTLEISD 390

  Fly   415 LVEESKQGHGKQQGAKQQGGWLGKGTIAA--ATGLSKVAK-------------------IINFWC 458
            |.|                  .|..|:..  ||.:|...|                   |::|.|
  Fly   391 LTE------------------YGALTLITHFATLVSTYTKGFTIIIEPFDDKTPTVSNPILHFSC 437

  Fly   459 FNPGFGMEQLLNTQVRSVILTSGTLAPLK--PLIAELAIPVAQH-----LENPHIVDQSQVYVKI 516
            .:....|..:. ::.::|::|||||:|:.  |.|.:.. ||...     |..|.::..      |
  Fly   438 LDSSIAMAPVF-SRFQTVVITSGTLSPMDMYPKILDFD-PVVMSSFTMTLARPCLLPM------I 494

  Fly   517 IGTGPDRQQLISNYANRDNPKYISSLGQTILNVARIVPDGLLVFFPSYPMLNKCVDAWQASGLWA 581
            :..|.|:..:.|.:..|::...|.:.||.::.||:.||||::.||.||..|...|.:|...|:..
  Fly   495 VSKGNDQVTISSKFETREDTAVIRNYGQLLVEVAKTVPDGIVCFFTSYLYLESVVASWYDQGIVD 559

  Fly   582 DISCKKPIFLEPRSKDQFTSTMEEFYQAIRDSKGAVFMAVCRGKVSEGLDFADRNGRAVIITGLP 646
            .:...|.:|:|.:...:.:..:..:.:|....:|||.:||.|||||||:||....||||::.|:|
  Fly   560 TLLRYKLLFIETQDNAETSYALMNYVKACDCGRGAVLLAVARGKVSEGVDFDHHYGRAVLMFGIP 624

  Fly   647 FPPLKDPKVILKRR--YL-EANRTRENQLLSGQEWYNLDATRAVNQAIGRVIRHRNDYGAILLCD 708
            :  :.....|||.|  || :..:.|||..|:      .||.|...|.:||.:|.:.|||.::..|
  Fly   625 Y--VYTQSRILKARLDYLRDQFQIRENDFLT------FDAMRHAAQCVGRALRGKTDYGIMIFAD 681

  Fly   709 SRFKDASQVQQLSKWIRGHLGD 730
            .||....:..:|.|||:.||.|
  Fly   682 KRFSRHDKRSRLPKWIQEHLVD 703

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rtel1	NP_572254.1	rad3	10..742	CDD:273169	208/798 (26%)
		HN_RTEL1	896..985	CDD:259826
Xpd	NP_726036.2	rad3	7..717	CDD:273169	209/800 (26%)