DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4078 and Ddx11

DIOPT Version :9

Sequence 1:NP_001259262.1 Gene:CG4078 / 31497 FlyBaseID:FBgn0029798 Length:985 Species:Drosophila melanogaster
Sequence 2:XP_038940692.1 Gene:Ddx11 / 316767 RGDID:1306675 Length:906 Species:Rattus norvegicus


Alignment Length:947 Identity:233/947 - (24%)
Similarity:382/947 - (40%) Gaps:259/947 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 IAGIPVHFPFEPYPVQRAYMEKVIHCLRDGTNGVLESPTGTGKTLSLLCSSLAWI---------- 60
            :.||...|||.|||:|:.:|.::...|..|..|:.||||||||:|||:|.:|:|:          
  Rat     8 MGGIHFPFPFPPYPIQKDFMAELYKVLEAGKIGIFESPTGTGKSLSLICGALSWLRDFEQKKLQA 72

  Fly    61 ----------------------------------------------------------------- 60
                                                                             
  Rat    73 EAGLLAPASGPTSSGRNSVLSSSSCQEPSDTLRPAGDPDWVTEFVQKKEERDLVERLREEQLRRR 137

  Fly    61 --------------------RTRQSEHQ------------------KQMVKME-----------K 76
                                |:||.|.:                  :|:.::|           :
  Rat   138 KREERLQEVCQDGRRRFAAKRSRQEEEETETLLRLSREMLAADTAPEQLGQLECGEEHLVLAEYE 202

  Fly    77 ADFSGLGGGAPGG--DLSELAKTMGRANNWGVPKVIYASRTHSQLTQAMRELKRTAYA-NMRSVV 138
            :|....|..|..|  ||.|          ..:.|:.|.|||||||.|.:||::::.:. ..|.|.
  Rat   203 SDEERRGSRADEGEDDLEE----------EHITKIYYCSRTHSQLAQFVREVQKSPFGKETRLVS 257

  Fly   139 LGSRDQLCIHPEVMREQGNSNKTN-MC---KLRVHSK-----------------TCSF--QMRVE 180
            ||||..||::.:| :..|:.:..| .|   :.|.|.|                 :|.|  ..::|
  Rat   258 LGSRQSLCVNEDV-KSLGSVHLMNDRCVDMQRRKHKKMRIGEDKPKRRRQKMQASCPFYNHEQME 321

  Fly   181 SRKDHPDLRGPTIMDIEDLVKVGQRLKICPYFASRELVPQADITFMPYNYLLDPKARKANKIELG 245
            ..:|...|.   :.|:|.||.:|:..:.|||:.||..:|.|.:..:||..||....|:|..|.|.
  Rat   322 LLRDEILLE---VKDMEQLVALGKEAQACPYYGSRFAIPAAQLVVLPYPMLLHAATRQAAGIRLQ 383

  Fly   246 NTIVILDEAHNIEKICEESASVQIKSSDVAMAIEDVTHIMQVFASGESQDMAGDEPKDFTLDDLT 310
            ..:||:|||||:........|.::..|.:..|...:...|:.:.            |.....:|.
  Rat   384 GQVVIIDEAHNLIDTITNIHSTEVNGSQLCQAHSQLLQYMERYR------------KRLKAKNLM 436

  Fly   311 LLKEMLLELEKAIDAIVVDNAVDGTTFPASMMY-----ELLGKANFTYGNVATIVSLLDKLVQYL 370
            .:|::|..|:|.: |::..|....   |::...     ||....:|.:.:....::|. |:.:||
  Rat   437 YIKQILYLLDKFV-AVLGGNVKQN---PSTQSLPQTGSELQSINDFLFQSQVDNINLF-KVQRYL 496

  Fly   371 LVASQQMSIRKGGTFTLLSDLLTIVFANKEDVMSKVYASFKVHVLVEESKQGHGKQQGAKQ-QGG 434
               .:.|..||...||   :...:|..:..|              .||::...|.||..|. |.|
  Rat   497 ---EKSMLSRKLFGFT---ECFGVVLPSLSD--------------SEENRGLGGFQQFLKSLQSG 541

  Fly   435 ----WLGKGTIAAATGLSKVAKI----------------------------INFWCFNPGFGMEQ 467
                .|.:|...|....|.:..|                            :.|...||.....|
  Rat   542 PPEDSLEEGQAVALRPASPLMHIEAFLEALTTANQDGRVIVNRQGSVGQSSLKFLLLNPAVHFAQ 606

  Fly   468 LLNTQVRSVILTSGTLAPL----KPLIAELAIPVAQHLENP--HIVDQSQVYVKIIGTGPDRQQL 526
            ::. :.|::::..||:.|:    :.|:|...:..::.:|..  |::....:...||.:||..|||
  Rat   607 VVK-ECRALVIAGGTMQPVSDFREQLLACSGVEASRVVEFSCGHVIPPDNILPLIICSGPSNQQL 670

  Fly   527 ISNYANRDNPKYISSLGQTILNVARIVPDGLLVFFPSYPMLNKCVDAWQASGLWADISCKKPIFL 591
            ...|..|:.|:.:...|:.:.|:..:||.|::.|.|||..|.:....|..:||.|.:|.:|.||.
  Rat   671 EFTYQRRELPQMMEETGRILCNLCNVVPGGMVCFLPSYEYLRQVHAHWDKTGLLARLSVRKKIFQ 735

  Fly   592 EPRSKDQFTSTMEEFYQAIRDSK-------GAVFMAVCRGKVSEGLDFADRNGRAVIITGLPFPP 649
            ||:...|....:..:...|....       ||:.::|..||:|||::|:|..||.|::.|:|:|.
  Rat   736 EPKRASQVEQVLTAYSTCIASCSHSEGHLTGALLLSVVGGKMSEGINFSDDLGRCVVMVGMPYPN 800

  Fly   650 LKDPKVILKRRYLEANRTR-ENQLLSGQEWYNLDATRAVNQAIGRVIRHRNDYGAILLCDSRFKD 713
            :|.|::..|..||:....| ..|...|.........:|:||:|||.|||:.|:.:|:|.|.|:..
  Rat   801 IKSPELQEKMAYLDQTIPRTHGQPPPGTVLIENLCMKAINQSIGRAIRHQKDFASIVLLDHRYAR 865

  Fly   714 ASQVQQLSKWIRGHLGDRPQC-SPFGPIVRELRQFFK 749
            .|.:.:|..|||    ||.:. :.|||....:|:|.:
  Rat   866 PSILAKLPAWIR----DRVEVKATFGPAFAAMRKFHR 898

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4078NP_001259262.1 rad3 10..742 CDD:273169 229/934 (25%)
DEAD_2 111..274 CDD:284209 60/186 (32%)
Helicase_C_2 546..725 CDD:290046 62/186 (33%)
HN_RTEL1 896..985 CDD:259826
Ddx11XP_038940692.1 Csf4_U 23..>113 CDD:357161 19/89 (21%)
rad3 225..889 CDD:273169 190/709 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D141017at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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