DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4078 and Ercc2

DIOPT Version :9

Sequence 1:NP_001259262.1 Gene:CG4078 / 31497 FlyBaseID:FBgn0029798 Length:985 Species:Drosophila melanogaster
Sequence 2:NP_001166280.1 Gene:Ercc2 / 308415 RGDID:1309109 Length:760 Species:Rattus norvegicus


Alignment Length:874 Identity:229/874 - (26%)
Similarity:370/874 - (42%) Gaps:211/874 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 IAGIPVHFPFE-PYPVQRAYMEKVIHCLRDGTNGVLESPTGTGKTLSLLCSSLAWIRTRQSEHQK 69
            :.|:.|:||:: .||.|.:||.::...|....:||||.|:|||||:|||...:|:.|....|   
  Rat     5 VDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIVAYQRAYPLE--- 66

  Fly    70 QMVKMEKADFSGLGGGAPGGDLSELAKTMGRANNWGVPKVIYASRTHSQLTQAMRELKR--TAYA 132
                                                |.|:||.|||..::.:.:.||::  :.|.
  Rat    67 ------------------------------------VTKLIYCSRTVPEIEKVIEELRKLLSFYE 95

  Fly   133 NMR-------SVVLGSRDQLCIHPEVMREQGNSNKTNMCKLRVHSKTCSFQMRVESRKDHP---- 186
            ...       .:.|.||..|||||||...:...:....|    ||.|.|: :|.:.::|..    
  Rat    96 QQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKC----HSLTASY-VRAQYQQDASLPHC 155

  Fly   187 ------DLRG-----PT-IMDIEDLVKVGQRLKICPYFASRELVPQADITFMPYNYLLDPK---- 235
                  |..|     |. |.:::||..:|||...||||.:|..:..|::....|:||||||    
  Rat   156 RFYEEFDTHGRQVPLPAGIYNLDDLKALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADL 220

  Fly   236 -----ARKANKIELGNTIVILDEAHNIEKICEESASVQIK-------SSDVAMAIEDVTHIMQVF 288
                 ||||        :|:.||||||:.:|.:|.||.:.       .|::....:.|..|.:. 
  Rat   221 VSKELARKA--------VVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQSNLDTLQKTVLRIKET- 276

  Fly   289 ASGESQDMAGDEPKDFTLDDLTLLKEMLLELEKAIDAIVVDNAVDGTTFPASMMYELLGKANFTY 353
                      ||.:  ..|:...|.|.|.|...|.:   .|..:.....|..::.|.:.      
  Rat   277 ----------DEQR--LRDEYRRLVEGLREASAARE---TDAHLANPVLPDEVLQEAVP------ 320

  Fly   354 GNVAT---IVSLLDKLVQYLLVASQQMSIRKGGTFTLLSDLLTIVFANKEDV------MSKVYAS 409
            |::.|   .:..|.:|::|:....:...:.:......||.|...|...::.:      :..:..:
  Rat   321 GSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLRSLLHT 385

  Fly   410 FKVHVLVEESKQGHGKQQGAKQQGGWLGKGTIAA--ATGLSKVAK-------------------I 453
            .::..|.:.|..                  |:.|  ||.:|..||                   |
  Rat   386 LEIADLADFSPL------------------TLLANFATLVSTYAKGFTIIIEPFDDRTPTITNPI 432

  Fly   454 INFWCFNPGFGMEQLLNTQVRSVILTSGTLAPLKPLIAELAIPVAQHLENPHIVDQSQVYV---- 514
            ::|.|.:....::.:.. :.:|||:|||||:||...              |.|:|...|.:    
  Rat   433 LHFSCMDASLAIKPVFE-RFQSVIITSGTLSPLDIY--------------PKILDFHPVTMATFT 482

  Fly   515 ----------KIIGTGPDRQQLISNYANRDNPKYISSLGQTILNVARIVPDGLLVFFPSYPMLNK 569
                      .|||.|.|:..:.|.:..|::...|.:.|..:|.::.:||||::.||.||..:..
  Rat   483 MTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMES 547

  Fly   570 CVDAWQASGLWADISCKKPIFLEPRSKDQFTSTMEEFYQAIRDSKGAVFMAVCRGKVSEGLDFAD 634
            .|.:|...|:..:|...|.:|:|.:...:.:..:|::.:|..:.:||:.::|.|||||||:||..
  Rat   548 TVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVARGKVSEGIDFVH 612

  Fly   635 RNGRAVIITGLPFPPLKDPKVILKRR--YL-EANRTRENQLLSGQEWYNLDATRAVNQAIGRVIR 696
            ..|||||:.|:|:  :.....|||.|  || :..:.|||..|:      .||.|...|.:||.||
  Rat   613 HYGRAVIMFGVPY--VYTQSRILKARLEYLRDQFQIRENDFLT------FDAMRHAAQCVGRAIR 669

  Fly   697 HRNDYGAILLCDSRFKDASQVQQLSKWIRGHLGDRPQCSPFGPIVRELRQFFKNAEANMKLPDER 761
            .:.|||.::..|.||..|.:..:|.:||:.||.|    |.....|.|..|..|.....|..|..|
  Rat   670 GKTDYGLMVFADKRFARADKRGKLPRWIQEHLTD----SNLNLTVDEGVQVAKYFLRQMAQPFHR 730

  Fly   762 ETDSPLETVCKTE---DEPLAAIPKVKRE 787
            |....|..:...:   :|.|..|.::.::
  Rat   731 EDQLGLSLLSLEQLQSEETLQRIEQIAQQ 759

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4078NP_001259262.1 rad3 10..742 CDD:273169 216/820 (26%)
DEAD_2 111..274 CDD:284209 62/203 (31%)
Helicase_C_2 546..725 CDD:290046 64/181 (35%)
HN_RTEL1 896..985 CDD:259826
Ercc2NP_001166280.1 rad3 7..708 CDD:273169 217/819 (26%)
DEXDc2 8..280 CDD:214693 94/334 (28%)
HBB 272..413 CDD:284245 29/180 (16%)
HELICc2 542..686 CDD:214694 53/151 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1199
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D141017at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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