DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rtel1 and chl-1

DIOPT Version :10

Sequence 1:NP_572254.1 Gene:Rtel1 / 31497 FlyBaseID:FBgn0029798 Length:985 Species:Drosophila melanogaster
Sequence 2:NP_499295.2 Gene:chl-1 / 176457 WormBaseID:WBGene00010839 Length:830 Species:Caenorhabditis elegans


Alignment Length:256 Identity:49/256 - (19%)
Similarity:86/256 - (33%) Gaps:72/256 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 TSSVSSS----NSNSVNANSTMLLSPNFSPSPCPRRSLPSTPLPNGHRRSLPPTPPTPAFSSTSE 89
            |.|:..|    |..|::.:....|....:.:|||   :||:|      .::.|...|||.::..:
 Worm   254 TGSIPDSPVYLNQKSISFSGNPGLCGGPTRNPCP---IPSSP------ATVSPPTSTPALAAIPK 309

  Fly    90 QEELFVNDEQINDEEPEFPIRSTRLRSFDLRD-------GHIF--------DKGFQKKPSE---- 135
            ........|..|:..|...:|...:....:.|       ..||        :|..:||.:.    
 Worm   310 SIGSNRETEPNNNSNPRTGLRPGVIIGIIVGDIAGIGILALIFFYVYKYKNNKTVEKKNNHSLEA 374

  Fly   136 ---KDFLSVNGTGFRRGDNRRATCPD-IFLFDSQNCLMKHVVLRIYGARNCGKKSLANRIHHFAT 196
               ||..|::.:.   .....::.|: ...|...:||.|:                         
 Worm   375 HEAKDTTSLSPSS---STTTSSSSPEQSSRFAKWSCLRKN------------------------- 411

  Fly   197 SMAPERVDPDENG------NDYTKMTTFLLNGREVTLEILLESTLENSPFRQSKTLYIVMY 251
            ....|..:.||..      .:..|.|...::|.|..||:  |:.|:.|.:....|...:||
 Worm   412 QETDETEEEDEENQRSGEIGENKKGTLVTIDGGEKELEV--ETLLKASAYILGATGSSIMY 470

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rtel1NP_572254.1 rad3 10..742 CDD:273169 49/256 (19%)
HN_RTEL1 896..985 CDD:259826
chl-1NP_499295.2 DEAD-like_helicase_N 28..>53 CDD:475120
rad3 121..820 CDD:273169 49/256 (19%)
Blue background indicates that the domain is not in the aligned region.

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