DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment IntS6 and ints6

DIOPT Version :9

Sequence 1:NP_001259259.1 Gene:IntS6 / 31496 FlyBaseID:FBgn0261383 Length:1284 Species:Drosophila melanogaster
Sequence 2:NP_001119900.1 Gene:ints6 / 569456 ZFINID:ZDB-GENE-070906-1 Length:854 Species:Danio rerio


Alignment Length:853 Identity:338/853 - (39%)
Similarity:456/853 - (53%) Gaps:143/853 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTIILFLVDTSSSMCQKAYVNGVQKTYLDIAKGAVETFLKYRQRTQDCLGDRYMLLTFEEPPANV 65
            |.::|||:|||:||.|::::.   .:||||||||||||||.|.|.....||||||::|||.||.:
Zfish     1 MPVLLFLIDTSASMNQRSHLG---TSYLDIAKGAVETFLKLRSRDPASRGDRYMLVSFEEAPAGI 62

  Fly    66 KAGWKENHATFMNELKNLQSHGLTSMGESLRNAFDLLNLNRMQSGIDTYGQGRCPFYLEPSVIIV 130
            |||||::|||||.||:|||:.||||.|::||.|||||||||:.||||.|||||.||:|||::|:.
Zfish    63 KAGWKDSHATFMTELRNLQAVGLTSFGQALRTAFDLLNLNRLVSGIDNYGQGRNPFFLEPAIIVA 127

  Fly   131 ITDGGRYSYRNGVHQEIILPLSNQIPGTKFTKEPFRWDQRLFSLVLRMPGN-KIDERVDGKVPHD 194
            ||||.:.:..:||..|:.|||:..:||::.|||||||||||||||||:||: ..|....|.||.|
Zfish   128 ITDGSKLTGSSGVQDELHLPLTTPLPGSELTKEPFRWDQRLFSLVLRVPGHASADPEPVGGVPLD 192

  Fly   195 DSPIERMCEVTGGRSYRVRSHYVLNQCIESLVQKVQPGVVLQFEPMLPKEATSATAGEAAGASTI 259
            .|||..||||||||||.|.|..:||||:||||||:|.|||:.||...|.                
Zfish   193 SSPITPMCEVTGGRSYSVFSQRMLNQCLESLVQKIQSGVVINFEKTGPD---------------- 241

  Fly   260 SGMGISSTSGAGP-----APDIVFQPVKKMIYVQKHITQKT-FPIGYWPLPEPYWPDSKAITLPP 318
                 .|.:..||     .|. |:....|:|||:.:  .|| .|:|:||:||.:|||..:.||||
Zfish   242 -----PSPTEDGPIEVKHGPQ-VWHSCHKLIYVRPN--PKTGVPVGHWPIPESFWPDQNSPTLPP 298

  Fly   319 RDAHPKLKVLTPAVD-EPQLVRSFPVDKYEIEGCPLTLQILNKREMNKCWQVIVTNGMHGFEL-- 380
            |.|||.:|.  ..|| ||.:|...|.||||:|..|||..||.::..:.||||.|.|.....||  
Zfish   299 RAAHPHVKF--SCVDSEPMVVDKVPFDKYELEPSPLTQYILERKSPHTCWQVFVCNSAKYGELGQ 361

  Fly   381 PFGYLKAAPNFSQVHLYVLAYNYPALLPILHDLIHKYNMSPPSDLMYKFNAYVRSIPPYYCPFLR 445
            |||||||:...:.|:|:|:.||||.:||:|.|||..:...||......|..|::::||||.|.||
Zfish   362 PFGYLKASTALNCVNLFVMPYNYPVVLPLLDDLIVVHKFKPPVKWRQSFENYLKTMPPYYIPALR 426

  Fly   446 KALVNINVPYQLLQFLLPENVDNYLSPTIANQLKHIKNTAKQDQENLCMKVYKQLKQPKPPYRQV 510
            |||..:..|.     ||.:|::..||.::.:.||.:...||.:.:.:|..|.|::    .|...:
Zfish   427 KALRMMGAPN-----LLADNMEYGLSYSVVSYLKKLSQQAKIEADRVCASVGKKV----APEGGI 482

  Fly   511 ETGKLFTGAPL--RRDLVRHPLLRDIFSKLHGEIDPVENYT-------------IVVPQPTHQSS 560
            :.....:...|  |:|..:  ||:.|..  .|...|:|..|             .:.||      
Zfish   483 KLRCRSSALSLANRKDFTQ--LLQSIMG--DGPALPMEANTKEFAGFQLASLNKALKPQ------ 537

  Fly   561 AKSHRNPFDIPRRDLVEEIAKMRETLLRPVSLVAK----DSGHCLPIAEMGNYQEYLKNKDNPLR 621
              ..|||:||||..|::::::||..||.....:.|    |..|.:|||:|||||::||:..:|||
Zfish   538 --GLRNPYDIPRAHLLDQLSRMRRNLLHASICILKGQDQDQLHSVPIAQMGNYQDFLKHCPSPLR 600

  Fly   622 EIEPTN-VRQHMFGNPYKKDKHMVMVDEADLSDVAPMKSPNGNGPGGAPPGSPSGSGSPTGPGPS 685
            |.:|.. .|.|.||||:|.||..:||||||                            ....|..
Zfish   601 EADPDQPKRLHTFGNPFKLDKKAMMVDEAD----------------------------EFVTGTQ 637

  Fly   686 SPGSSPGGGSGPGMPGMPGMGGGMSGLMLGAGGSGGSSKKLDGTSRGRKRKAGPLPRS------- 743
            ..|..||..|.|.:.|.|.....||.|:                   |..:|...||:       
Zfish   638 GKGKRPGESSSPTVGGAPKRRRCMSPLL-------------------RPGRAYTPPRTPSRTPDN 683

  Fly   744 --FEFRRSSTDSRSSSSGSESSTTGSAPGSPIPGATSSISGCDSAMGADGGPSSSCFDEDSNSNS 806
              .|.....|:....:..|:|..      :|:| .:..|...:.....:......|..|:..|:.
Zfish   684 NHLELENHITNHLEPNCDSDSDI------NPVP-ESEVIQQSNHLQTEEVENQQDCVQENGQSSD 741

  Fly   807 SFVSSTSE 814
            |.:|..||
Zfish   742 SELSLGSE 749

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
IntS6NP_001259259.1 vWFA 4..>147 CDD:238119 88/142 (62%)
INT_SG_DDX_CT_C 1196..1257 CDD:291946
ints6NP_001119900.1 vWFA 4..>131 CDD:238119 84/129 (65%)
INT_SG_DDX_CT_C 775..835 CDD:291946
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170596802
Domainoid 1 1.000 360 1.000 Domainoid score I913
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 589 1.000 Inparanoid score I949
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D551849at2759
OrthoFinder 1 1.000 - - FOG0003020
OrthoInspector 1 1.000 - - otm24648
orthoMCL 1 0.900 - - OOG6_103620
Panther 1 1.100 - - LDO PTHR12957
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3035
SonicParanoid 1 1.000 - - X2010
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1111.020

Return to query results.
Submit another query.