DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Snx27 and snx17

DIOPT Version :9

Sequence 1:NP_727023.1 Gene:Snx27 / 31493 FlyBaseID:FBgn0052758 Length:531 Species:Drosophila melanogaster
Sequence 2:XP_009292899.1 Gene:snx17 / 568263 ZFINID:ZDB-GENE-030131-9475 Length:473 Species:Danio rerio


Alignment Length:390 Identity:97/390 - (24%)
Similarity:175/390 - (44%) Gaps:34/390 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   171 SIPDYGI-VNRNGERYIVFNIHMAGRQLCSRRYREFANLHSLLRKEFSGFNFPKLPGKWPFQLSE 234
            |||:..: .:.||..|:.:|||:.|...|..||.:...||..::||:.....|..|.|..|.|:.
Zfish     4 SIPETEVRSDENGSSYVAYNIHVNGVLHCRVRYSQLLGLHEQIKKEYGNNVVPAFPPKKIFTLTP 68

  Fly   235 QQLDTRRRGLEQYLEKVCAVRVIAESDAVQDFLTDTEDDISASP---VDIKVMLPDHEVSTVSVK 296
            .::|.||..||:|::.|....::..|:....||...:.:....|   |.:::.|.:.:...|::.
Zfish    69 AEVDQRREQLEKYMQAVRQDPILGSSEMFNSFLRKAQ
QETQQIPTEEVQLEIYLSNGQKVKVNIL 133

  Fly   297 KSSNAQVVWEILVQRANLTAYTQQYFYLFEIVE-----YNFERKLQPHEIPHQLYVQNYSTASST 356
            .|...:.|.|.:..:.:|......||.||.:.|     ..:.||||..|:|   ||...|..||.
Zfish   134 TSDQTEDVLEAVASKLDLPDELVGYFSLFLVQERADGSCTYVRKLQEFELP---YVSITSLHSSD 195

  Fly   357 C-LCVRRWLFSVAKELTLPDGEQAGRFIFYQAVDEVNRGNIRADGRLY-ELKALQDAKKAGDYLA 419
            . :.:|:..:..|.:..:.|.......::.|.|.:::||.|..:...: :||:||:.....:::.
Zfish   196 YRIILRKSYWDTAYDSDVMDDRVGLNLLYAQTVSDIDRGWILVNKEQHRQLKSLQEKGSKKEFIR 260

  Fly   420 LARTLPGYGDVVFPHCSCDSRKEG-HVVPAVGMKSFRLHACREDGSLEAQMVELT----WDSITR 479
            ||:||..||.:.|..|..|..::| ||:...|......|....:..::....::|    | .:|.
Zfish   261 LAQTLKYYGYIKFDPCITDFPEKGCHVIVGAGNNELNFHVKLPNEQMKEGSFKVTRMRCW-RVTS 324

  Fly   480 SE-------SDEESMSFC-------FQYNRPDKPARWVKVYTPYHAFLADCFDRIMEERKWEDSG 530
            |:       ::..|.|.|       |:|.......:||.:.:.....::.|...:::|...:.||
Zfish   325 SQVPVANGTANPSSSSKCDVKLELAFEYLMSKDRLQWVTITSQQAIMMSICLQSMVDELMVKKSG 389

  Fly   531  530
            Zfish   390  389

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Snx27NP_727023.1 PDZ_signaling 46..138 CDD:238492
PX_SNX27 165..270 CDD:132796 32/99 (32%)
UBQ 278..363 CDD:294102 25/93 (27%)
FERM-like_C_SNX27 428..528 CDD:270146 22/118 (19%)
snx17XP_009292899.1 PX_SNX17_31 2..105 CDD:132795 32/100 (32%)
UBQ 115..>185 CDD:294102 18/72 (25%)
FERM-like_C_SNX17 268..388 CDD:270145 23/120 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3784
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.