DRSC/TRiP Functional Genomics Resources

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Protein Alignment Snx27 and snx12

DIOPT Version :9

Sequence 1:NP_727023.1 Gene:Snx27 / 31493 FlyBaseID:FBgn0052758 Length:531 Species:Drosophila melanogaster
Sequence 2:NP_587991.1 Gene:snx12 / 2538748 PomBaseID:SPCC16A11.04 Length:1010 Species:Schizosaccharomyces pombe


Alignment Length:526 Identity:117/526 - (22%)
Similarity:199/526 - (37%) Gaps:134/526 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 VGENHPLPTPTPASAVVTASS---GGGGGGAVVMGVGVGVTTANGPRVVTI------YKTETGFG 59
            :|||.|..:..|:...:::||   ......::.:.|...::.......:.:      |..|....
pombe   552 LGENIPAISKQPSYLSISSSSKSINSSPSPSIQLSVSSSISRDKNLSPLDLELDDPTYSDEEEVL 616

  Fly    60 FNVRGQVSEGGQLRSING---ELYAPLQHVSAVLENGAAEKAGIKKGDRILEVNGVSVEGATHKQ 121
            |...|.:.....:..:|.   ||.|.|..::.:::.  ||....:|..:.|..|...:|.|.|::
pombe   617 FAPPGDLQLSESIDELNNNIEELKAQLNAINTLIKK--AELVADQKQLKSLTKNHQEIEKAIHRK 679

  Fly   122 VVDLIKSGGDCLTLTVISVTQQEADRLEPQEDQS-----GYSYIDYSDKRSLPISIPDYGIVNRN 181
                                :::.|:...||:.|     ....|| |.|.|...:.||:.:....
pombe   680 --------------------ERQRDQYMSQEEDSKLFNRSRVSID-SFKISKEENTPDFAVYTIR 723

  Fly   182 GERYIVFNIHMAGRQLCSRRYREFANLHSLLRKEFSGFNFPKLPGKWPF-QLSEQQLDTRRRGLE 245
            .||  :.|.|:....:.:|||||||.||..|::.:.|....|.|.|... .|::..|:.||..||
pombe   724 IER--LENGHVRSGWMVARRYREFAELHKQLKQTYPGVRSLKFPQKSIITSLNKNVLEYRRGALE 786

  Fly   246 QYLEKVCAVRVIAESDAVQDFLTDTEDDISA----SPVDI----KVMLPDHEVSTVSVKKSSNAQ 302
            :||:.:..:..:.:|..::.||  ::.:|:|    :|.::    |.:|   ||....|..|.||.
pombe   787 EYLQSLFRMPEVCDSKMLRMFL--SQQNITAPQMFNPKEVGKKWKQLL---EVLGFEVNNSFNAS 846

  Fly   303 VVWEILVQRANLTAYTQQYF------YLFEIVEYNFERKLQPHEIPHQLYVQNYSTASSTCL--C 359
            .|            .|...|      :|.|:...|.:.|.|  .:|.:.|:..........|  .
pombe   847 NV------------NTNSSFSGPISEFLVELFSPNDDAKQQ--WLPKKTYISILEQLFGGALEKR 897

  Fly   360 VRRWLFSVAKELTLPDGEQAGRFIFYQAVDEVNRG--------------NIRADGRLY----ELK 406
            :|..||    :|..|:.       .|:.:.|..||              :.||....|    :||
pombe   898 IRLQLF----QLFTPEK-------IYRKLREFRRGLEGKSNHDHSKDRRHSRARKPAYADRNQLK 951

  Fly   407 ALQDAKKAGDYLALARTLPGYGDVVFPHCSCDSRKEGHVVPAVGMKSFRLHACREDGSLEAQMVE 471
            |     :||  :.||...|||                  .|.:.:|  |:....::.||.|.::.
pombe   952 A-----EAG--ILLASMFPGY------------------TPDIAVK--RIFRILQNQSLNAHVIY 989

  Fly   472 LTWDSI 477
            ...|.|
pombe   990 TLLDEI 995

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Snx27NP_727023.1 PDZ_signaling 46..138 CDD:238492 17/100 (17%)
PX_SNX27 165..270 CDD:132796 33/105 (31%)
UBQ 278..363 CDD:294102 21/96 (22%)
FERM-like_C_SNX27 428..528 CDD:270146 8/50 (16%)
snx12NP_587991.1 PXA 101..268 CDD:280373
RGS 395..527 CDD:295367
PX_MDM1p 680..810 CDD:132786 40/134 (30%)
Nexin_C 883..981 CDD:285792 26/135 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1370
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

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