DRSC/TRiP Functional Genomics Resources

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Protein Alignment Snx27 and snx-17

DIOPT Version :9

Sequence 1:NP_727023.1 Gene:Snx27 / 31493 FlyBaseID:FBgn0052758 Length:531 Species:Drosophila melanogaster
Sequence 2:NP_001076762.1 Gene:snx-17 / 184624 WormBaseID:WBGene00008927 Length:540 Species:Caenorhabditis elegans


Alignment Length:465 Identity:98/465 - (21%)
Similarity:176/465 - (37%) Gaps:76/465 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   125 LIKSGGDCLTLTVISVTQQEADRLEPQEDQSGYSYIDY------------------SDKRS---- 167
            :.:|.||     ..|.:..|.| ||.::.....|.||:                  :||.:    
 Worm     7 MARSNGD-----KPSTSSMEED-LEIEQSMRNASIIDHQYEKEENKNHRVLNAFDPADKTTFSDM 65

  Fly   168 LPISIPD-YGIVNRNG--ERYIVFNIHMAGRQLCSRRYREFANLHSLLRKEFS-GFNFPKLPGKW 228
            :.:.:|| ..:|.|:.  .:|..:|||:.|....|.|:........|::::|| .:..|:.|.|.
 Worm    66 IHVDVPDTKTLVERSDGITKYTAYNIHINGWYHGSVRFSHLYEFAELIKQKFSQRYKGPEFPAKK 130

  Fly   229 PFQLSEQQLDTRRRGLEQYLEKVCAVRVIAESDAVQDFLTDTEDD---ISASPVDIKVMLPDHEV 290
            .|:|..:.:|.||:.:.:|.:.:.....:|....|:..|...:.|   .::..|.:.|.|.:.|.
 Worm   131 LFKLDPKAIDERRQKITKYFQALVQHPEVARHYLVEKKLLGFQIDSFRATSQYVTLDVFLGNGEK 195

  Fly   291 STVSVKKSSNAQVVWEILVQRANLTAYTQ--QYFYLF------------EIVEYNFE----RKLQ 337
            :|:....|.:...:.:|:.::.......|  .:|.||            .:...||.    |.|:
 Worm   196 TTIKCLVSDSTLEIMKIICEKLGFKNKDQFIYHFGLFMAKGRDPTNACYSVTTENFNPLLTRFLR 260

  Fly   338 PHEIP-------HQLYVQNYSTASSTCLCVRRWLFSVAKELTLPDGEQAGRFIFYQAVDEVNRGN 395
            ..|.|       :|.|.:|   .....||:|:.::....|..|.|.......::.||:.:...|:
 Worm   261 NFEAPFVSLSTANQKYNEN---GHYHFLCLRKLIWDSRVEEPLLDDGNFVELLYKQAMQDYKNGH 322

  Fly   396 I-----RADGRLYELKALQDAKKAGDYLALARTLPGYGDVVFPHCSCDSRKEGHVVPA---VGMK 452
            :     ..|.:|....|..|:|.   :|.....|..|...:...||||..|.|  .|.   .|.:
 Worm   323 MDPVKEDLDSKLKSCMARNDSKM---FLRTCHQLSTYSYEIMSPCSCDYPKPG--TPCEIKFGRR 382

  Fly   453 SFRLHACREDGSLEAQMVELTWDSITRSESDEESMSFCFQYNRPDKPARWVKVYTPYHAFLADCF 517
            ...:....|.|..:..:...|...:.|.....:.:||.|:|........|:.:.|.....::...
 Worm   383 QIIMTTRDETGKPKPSIFRATRIRVWRITQVMDKISFQFEYLMAKDTFEWITLDTDQSILMSLLL 447

  Fly   518 DRIMEERKWE 527
            ..|..|..:|
 Worm   448 QSIGSEILYE 457

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Snx27NP_727023.1 PDZ_signaling 46..138 CDD:238492 3/12 (25%)
PX_SNX27 165..270 CDD:132796 27/112 (24%)
UBQ 278..363 CDD:294102 23/109 (21%)
FERM-like_C_SNX27 428..528 CDD:270146 21/103 (20%)
snx-17NP_001076762.1 PX_SNX17_31 67..173 CDD:132795 26/105 (25%)
FERM-like_C_SNX17 356..459 CDD:270145 22/104 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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