DRSC/TRiP Functional Genomics Resources

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Protein Alignment Snx27 and snx-27

DIOPT Version :9

Sequence 1:NP_727023.1 Gene:Snx27 / 31493 FlyBaseID:FBgn0052758 Length:531 Species:Drosophila melanogaster
Sequence 2:NP_492758.1 Gene:snx-27 / 172937 WormBaseID:WBGene00009116 Length:578 Species:Caenorhabditis elegans


Alignment Length:499 Identity:227/499 - (45%)
Similarity:323/499 - (64%) Gaps:25/499 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 PRVVTIYKTETGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLENGAAEKAGIKKGDRILEVN 110
            |.||.:.|:||||||||:|||||||||||:||:||||||||||||..|||::||::|||||||||
 Worm    47 PHVVKVVKSETGFGFNVKGQVSEGGQLRSLNGQLYAPLQHVSAVLRRGAADQAGLRKGDRILEVN 111

  Fly   111 GVSVEGATHKQVVDLIKSGGDCLTLTVISVTQQEADRLEPQEDQS-GYSYIDYSDKRSLPISIPD 174
            |::|||:||::||||||:|||.||:.||||...:.||.:..|:.| .|.: |||:.||||::||.
 Worm   112 GLNVEGSTHRKVVDLIKNGGDELTMIVISVEDPDMDRFDYGEESSMAYGH-DYSENRSLPVTIPS 175

  Fly   175 YGIVNRNGERYIVFNIHMAGRQLCSRRYREFANLHSLLRKEFSGFNFPKLPGKWPFQLSEQQLDT 239
            |..|..:.|||.|||||||||||.||||.||..||..|:|.|..:.||:|||||||:|||||||:
 Worm   176 YNTVQDSLERYTVFNIHMAGRQLGSRRYSEFVELHLALKKHFYDYCFPQLPGKWPFKLSEQQLDS 240

  Fly   240 RRRGLEQYLEKVCAVRVIAESDAVQDFLTDTEDDISASPVDIKVMLPDHEVSTVSVKKSSNAQVV 304
            |||||||||||:|.:||||||:.||.||.:.:   ....|:|::||||....|:..::|..:.:.
 Worm   241 RRRGLEQYLEKICTIRVIAESELVQKFLMECD---PMCEVEIRLMLPDGSPITIRTRRSITSSLF 302

  Fly   305 WEILVQRANLTAYTQQYFYLFEIVEYNFERKLQPHEIPHQLYVQNYSTASSTCLCVRRWLFSVAK 369
            :....:|..::........:||:::.:||||:...|..|:||..|||:|||:||.:|:::|.:.:
 Worm   303 FTSAQRRLKMSREGAAACSIFELLDNSFERKVSESESVHELYTHNYSSASSSCLLLRKFIFDIDR 367

  Fly   370 ELTLPDGEQA-GRFIFYQAVDEVNRGNIRADGRLYELKALQDAKKAGDYLALARTLPGYGDVVFP 433
            |..|...:.. .:|.|.||:.:::.|.:....:.|:|:|:|:.:...:.|.:||.|.||..|.||
 Worm   368 ERALCKRDMVFKQFCFVQAIADLHSGKVVTSRKSYQLRAIQNEENMDELLEMARELEGYNQVTFP 432

  Fly   434 HCSCDSRKEGHVVPAVGMKSFRLHACREDGSLEAQMVELTWDSITRSESDEESMSFCFQYNRPD- 497
            ...|..||....|..|...:..|..|.|||:    .:|:.|..|......:|:.:|.|:|.|.: 
 Worm   433 PSVCILRKRRQTVIMVVRFANLLLKCPEDGN----SMEIDWSRIKDFRVCDEATAFSFEYIRDEV 493

  Fly   498 ----------KPARWVKVYTPYHAFLADCFDRIMEERK----WE 527
                      :..::|::.|.:..::|:||..|..||:    |:
 Worm   494 GDSEQEQTEPRKTKYVRLETGFAEYMAECFAEIQFERQAGSDWK 537

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Snx27NP_727023.1 PDZ_signaling 46..138 CDD:238492 68/91 (75%)
PX_SNX27 165..270 CDD:132796 71/104 (68%)
UBQ 278..363 CDD:294102 28/84 (33%)
FERM-like_C_SNX27 428..528 CDD:270146 30/115 (26%)
snx-27NP_492758.1 PDZ_signaling 47..139 CDD:238492 68/91 (75%)
PX_SNX27 166..271 CDD:132796 71/104 (68%)
UBQ 276..348 CDD:294102 19/71 (27%)
FERM-like_C_SNX27 427..535 CDD:270146 29/111 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160158789
Domainoid 1 1.000 141 1.000 Domainoid score I2941
eggNOG 1 0.900 - - E1_KOG3784
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H12797
Inparanoid 1 1.050 423 1.000 Inparanoid score I994
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG52273
OrthoDB 1 1.010 - - D193838at33208
OrthoFinder 1 1.000 - - FOG0006537
OrthoInspector 1 1.000 - - oto19148
orthoMCL 1 0.900 - - OOG6_107041
Panther 1 1.100 - - LDO PTHR12431
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1370
SonicParanoid 1 1.000 - - X4771
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1716.800

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