DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment AdamTS-B and Adamtsl5

DIOPT Version :9

Sequence 1:NP_572247.2 Gene:AdamTS-B / 31490 FlyBaseID:FBgn0029791 Length:1023 Species:Drosophila melanogaster
Sequence 2:XP_038934914.1 Gene:Adamtsl5 / 314626 RGDID:1305607 Length:714 Species:Rattus norvegicus


Alignment Length:541 Identity:144/541 - (26%)
Similarity:196/541 - (36%) Gaps:180/541 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   612 GGWGDWSEWSECSRSCGGGVSTQQRECDNPVPANGGVFCIGERKRYKICR----------KRPCP 666
            |.|..|..||.||.|||.|||.::|.|   |.......|.|:...|::|:          .:.||
  Rat   198 GEWTLWGSWSRCSSSCGRGVSVRRRHC---VRLPEEELCWGDSHEYRVCQLPFYPSTFMLTQDCP 259

  Fly   667 AEEPSFRAQQCARFDNVSYQGA--TYKWLPFFDKNNPCKLFCSDVDDTIIANWGATVLDGTPCTL 729
            .....||..||:.::.....|.  ||:|:||....|.|.|.|.........::| .||||||||.
  Rat   260 PGAIPFRDLQCSLYNGHPVLGTQKTYQWVPFHGAPNLCDLNCLAEGHAFYHSFG-RVLDGTPCTP 323

  Fly   730 GTNNMCIDGICKKVGCDWIVDSEVQDDRCGVCGGSGD---------------------------- 766
            ||..:|:.|.|...|||.::.|...:||||:|||:.|                            
  Rat   324 GTQGLCVAGRCLSAGCDGLLGSGTLEDRCGLCGGANDSCLFVQRVFRDAGDCPIPPHGLHLRSMV 388

  Fly   767 -------------------QCQPVRETYTDP---------FAA-------KDGA---YVEIVTIP 793
                               ||.||..|...|         .||       ..||   |..:..||
  Rat   389 DRGPFNEFGSWEPRLLLIGQCVPVHPTTAHPCTCHRVPENLAALHPKLPPASGAFAGYWNVTLIP 453

  Fly   794 ARARHILIRELANSPHFLAIATGDGGDRFYLNGDSLISMPGEFEIAGAESLYDR-VDEQETITIP 857
            ..||||.:.:  .|.:.||:.|.||  .:.||||.::|:||.:|.||...:|.| ...:||:...
  Rat   454 EGARHIRVTQ--RSHNHLALVTRDG--HYVLNGDGVLSLPGTYEAAGTRVVYTRSAGPEETLQAT 514

  Fly   858 QPIQHSISLYAIVRGNESNAGIFYEFTLPALNVTAGRQFQWRLSNWTACSASCGGGVQHREPICQ 922
            .|....:.|..::|  |.|.|:.:||.||          :.|..::.|...:.|..::..:|...
  Rat   515 GPTSQELLLQVLLR--EPNPGVHFEFWLP----------RERYGSFQAQVHALGWPLRQPQPREV 567

  Fly   923 ENGKALGDTLPCWTHAKNKRPARQSR----GCGDQPCP-----AH-------------------- 958
            |...|....:|      ...|||.:.    .||  |||     ||                    
  Rat   568 EPQPAETTVVP------EAIPARVASLAPDPCG--PCPDSRGRAHRLLHYCGSDFVFQARVLGRH 624

  Fly   959 ----------------------------WWPGPWQFCPVTCRPVGFVAPPQR------RRSVVCL 989
                                        |.||   .||  |.|:.    |.|      ||.|...
  Rat   625 RLAQETRYEVRVLLIYKNRSPLRSREYVWAPG---HCP--CPPLA----PHREYLLATRRHVSPD 680

  Fly   990 DEHD-VVVADAECGHLQKPAE 1009
            ...| :::..|....|..|||
  Rat   681 GTQDRLLLPQAGYARLWSPAE 701

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AdamTS-BNP_572247.2 Pep_M12B_propep 78..194 CDD:279848
ZnMc_ADAMTS_like 314..518 CDD:239801
Reprolysin 315..521 CDD:279729
ADAM_CR <558..602 CDD:301627
TSP1 614..666 CDD:214559 19/61 (31%)
ADAM_spacer1 773..886 CDD:283607 41/132 (31%)
TSP1 901..956 CDD:214559 12/58 (21%)
Adamtsl5XP_038934914.1 TSP1 200..246 CDD:214559 19/48 (40%)
ADAM_spacer1 444..541 CDD:368694 35/102 (34%)
NTR_like 608..707 CDD:239600 18/103 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3538
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.